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>A1E8J1_LOOPS
1-16, 28-92, 107-114, 125-189, 197-215, 225-306, 315-326, 342-394, 403-439, 450-473, 483-495, 504-549, 557-586, 595-604, 621-634, 657-732, 751-768, 805-951, 966-1007, 1021-1030, 1062-1188, 1206-1230, 1241-1263, 1278-1320, 1360-1391, 1399-1435, 1445-1459, 1482-1513, 1523-1552, 1576-1617, 1673-1686, 1720-1752, 1763-1812, 1821-1868, 1874-1885, 1892-1969, 1978-1986, 2080-2088, 2093-2112, 2134-2143, 2153-2169, 2242-2253, 2258-2276, 2292-2330, 2354-2423, 2464-2473
MSGILDRCTC TPNARVfvae gqvyctrCLS ARSLLPLNLQ VPELGVLGLF YRPEEPLRWT LPRAFPTVEC SPAGACWLSA IFPIARMTSG NLnfqqrmvr vaaeiyRAGQ LTPTvlktlq vyerGCRWYP IVGPVPGVGV YANSLHVSDK PFPGATHVLT NLPLPQRPKP EDFCPFECAM ADVYDIDRGa vmyvagGKVS WAPRGGNEVK FEPVPkelkl vanrLHTSFP PHHVVDMSRF TFMTPGSGVS MRVEYQHGCL PADTVPEGNC WWRLFDSLPP EVQYKEIRHA NQFGYQTKHG VPGKYLqrrl qvngLRAVTD THGPIViqyf svkeswirhl kLVEEPSLPG FEDLLRIRVE PNTSPLAGKD EKIFRFGSHK WYGAGKRARK TRSGattmva hhASSAHETR QATKHEGAGA NKAEHLKRYS PPAEGNCGWh cisaianrmV NSNFETTLPE RVRPSDDWAT DEDlvntiqi lrLPAALDRN GACGSakyvl kleGEHWTVS VIPGMSPTLL PLECVQGCCE HKGGLVSPDA VEISGFDPAc ldrlakVMHL PSSTIPAALA ELSDDSNRPV SPAATTwtvs qfyaRHRGGD HHDQvclgki islcqviedc CCHQNKTNRA TPEEvtakid qylrgatsle eclaklERVS PPSAADTSFD WNVVLPGVVA ANQTTEQPHV NSCCTLVPPV TQEPLGKDSV PLTAFSLSNC YYPAQGDEVH HRerlnsvls kleevvleey GLMSTGLGPR PVLPSGLDel kdqmeedllk lantqatsem mawaaeqvdl kawvKSYPRW TPPPPPPRVQ PRRTKSVKSL PEGKPVPAPR RKVRSDCGSP VLMGDNVPNG SEETVGGPLN FPTPSEPMTP MSEPVLVPAS RRVPKLMTPL SGSAPVPAPR RTVTTTLTHQ DEPLDLSASS QTEYEAFPLA PSQNMGILEA Ggqeveevls eisdiLNDTN PAPVSSSSSL SSVKITRPKY SAQAIIDSGG PCSGHLQkek eaclsimrea CDASKLGDPA tqewlsrmwd rvdmltwrnt sayqafriln gRFEFLPKMI LETPPPHPCG FVMLPRTPAP SVSAESDLTI GSVATEDVPR ILGKIGDTDE LLDRGPSVPS KGEPVCDQPA KDPRMSPRES DESMIAPPAD TGGVGSFTDL PSSDGVDVGG GGPLRTVKtk agrlldqlsc qvfslVSHLP IFFSHLFKSD SGYSPGDWGF aaftlfclfl CYSYPFFGFA PLLGVFSGSS RRVrmgvfgc wlafavgLFK PVSDPVGTAC EFDSPECRNV LHSFELLKPW DPVRSLVVGP vglglailgr llggaryiwh fllrlgivad cilagayvlS QGRCKKCWGS CVRTAPNEIA FNVFPFTRAT RsslidlcDR FCAPKGMDPI FLATGWRGCW TGRSPIEQPS EKPIAfaqld ekriTARTVV TQPYDPNQAv kclrvlqagg amvaeavpkv vKVSAIPFRA PFFPAGVKVD PECRIVVDPD TFTtalrsgy stANLVLGTG DFAQLNGLKI RQISKPSGGG PHliaalhva rsmalhmlag vyvtaVGSCG TGTNDPWCTN PFAVPGYGPG SLCTSRLCIS QHGLTLPlta lvagfglqei alvvlifvsi ggmahrlsck admlcillai asyvwvpltw llCVFPCWLR WFSLHPltil wlvfflisvn ipsgilavvl lvslwllgrY TNIAGLVTPY DIHHYTSGPR GVAALATAPD GTylaavrra alTGRTMLFT PSQLGSLLEG AFRTQKPSLN TVNVVGSSMG SGGVFTIDGK IKcvtaahvl TGNSARVSGV GFNQMLDFDV KGDFAIADCP NWQGVAPKAQ FCEDGWTGra ywlTSSGVEP GVIGNgfafc fTACGDSGSP VITEAGELVG VHTGSNKQGG GIVTRPSGQF CNVKPIKLSE LSEFFAGPKV PLGDVKIGSH IIKDTCEVPs dlcallaAKP ELEGGLstvq llcvffllwr mmghawtplv avgffilnei lpavlvrsvf sfgmfvlswl tpwsaqvlmi rlltaalnrn rwslgfyslg avtsfvadlA VTQGHPLQvv mnLSTYAFLP RMMVVTSPVP VIacgvvhll aiilylfkyr clhNVLVGDG VFSsafflry faEGKLREGV SQSCGMSHEs ltgalamrlt dedldfltkw tdfkcfvsas nmrnaagqfi eaayakalri elaqlvqvdk vrgtmaklea fADTVAPQLS PGDivvaLGH TPVGSIFDLK VGSTKHtlqa ietrvlagsk mTVARVVDPT PAPPPVPVPI PLPPKVLENG PNAWGDEDRL nkkkrrrmea vgifvmdgkk yqkFWDKNSG DVFYEEVHIS TDEWECLRTG DPVDFDPETG IQCGHITIED KVYNVFTSPS GRRFLVPANP ENRraqweaa klsveqalgm mnvdgeltak eleklkriid klqGLTKEQC LNC
>A1E8J1_HOTLOOPS
1-15, 105-115, 199-209, 229-239, 316-324, 362-386, 403-413, 461-471, 482-491, 625-636, 752-761, 809-850, 897-909, 967-984, 1099-1142, 1448-1458, 1492-1503, 2312-2335, 2342-2353, 2461-2473
MSGILDRCTC TPNARvfvae gqvyctrcls arsllplnlq vpelgvlglf yrpeeplrwt lprafptvec spagacwlsa ifpiarmtsg nlnfqqrmvr vaaeIYRAGQ LTPTVlktlq vyergcrwyp ivgpvpgvgv yanslhvsdk pfpgathvlt nlplpqrpkp edfcpfecam advydidrga vmyvaggkVS WAPRGGNEVk fepvpkelkl vanrlhtsFP PHHVVDMSRf tfmtpgsgvs mrveyqhgcl padtvpegnc wwrlfdslpp evqykeirha nqfgyqtkhg vpgkylqrrl qvnglRAVTD THGPiviqyf svkeswirhl klveepslpg fedllrirve pNTSPLAGKD EKIFRFGSHK WYGAGKrark trsgattmva hhASSAHETR QATkhegaga nkaehlkrys ppaegncgwh cisaianrmv nsnfettlpe RVRPSDDWAT Dedlvntiqi lRLPAALDRN Gacgsakyvl klegehwtvs vipgmsptll plecvqgcce hkgglvspda veisgfdpac ldrlakvmhl psstipaala elsddsnrpv spaattwtvs qfyarhrggd hhdqvclgki islcqviedc cchqNKTNRA TPEEVTakid qylrgatsle eclaklervs ppsaadtsfd wnvvlpgvva anqtteqphv nscctlvppv tqeplgkdsv pltafslsnc yypaqgdevh hrerlnsvls kleevvleey gLMSTGLGPR Pvlpsgldel kdqmeedllk lantqatsem mawaaeqvdl kawvksypRW TPPPPPPRVQ PRRTKSVKSL PEGKPVPAPR RKVRSDCGSP vlmgdnvpng seetvggpln fptpsepmtp msepvlvpas rrvpklMTPL SGSAPVPAPr rtvtttlthq depldlsass qteyeafpla psqnmgilea ggqeveevls eisdilNDTN PAPVSSSSSL SSVKitrpky saqaiidsgg pcsghlqkek eaclsimrea cdasklgdpa tqewlsrmwd rvdmltwrnt sayqafriln grfeflpkmi letppphpcg fvmlprtpap svsaesdlTI GSVATEDVPR ILGKIGDTDE LLDRGPSVPS KGEPVCDQPA KDprmspres desmiappad tggvgsftdl pssdgvdvgg ggplrtvktk agrlldqlsc qvfslvshlp iffshlfksd sgyspgdwgf aaftlfclfl cysypffgfa pllgvfsgss rrvrmgvfgc wlafavglfk pvsdpvgtac efdspecrnv lhsfellkpw dpvrslvvgp vglglailgr llggaryiwh fllrlgivad cilagayvls qgrckkcwgs cvrtapneia fnvfpftrat rsslidlcdr fcapkgmdpi flatgwrgcw tgrspieqps ekpiafaqld ekritarTVV TQPYDPNQav kclrvlqagg amvaeavpkv vkvsaipfra pFFPAGVKVD PECrivvdpd tfttalrsgy stanlvlgtg dfaqlnglki rqiskpsggg phliaalhva rsmalhmlag vyvtavgscg tgtndpwctn pfavpgygpg slctsrlcis qhgltlplta lvagfglqei alvvlifvsi ggmahrlsck admlcillai asyvwvpltw llcvfpcwlr wfslhpltil wlvfflisvn ipsgilavvl lvslwllgry tniaglvtpy dihhytsgpr gvaalatapd gtylaavrra altgrtmlft psqlgslleg afrtqkpsln tvnvvgssmg sggvftidgk ikcvtaahvl tgnsarvsgv gfnqmldfdv kgdfaiadcp nwqgvapkaq fcedgwtgra ywltssgvep gvigngfafc ftacgdsgsp viteagelvg vhtgsnkqgg givtrpsgqf cnvkpiklse lseffagpkv plgdvkigsh iikdtcevps dlcallaakp elegglstvq llcvffllwr mmghawtplv avgffilnei lpavlvrsvf sfgmfvlswl tpwsaqvlmi rlltaalnrn rwslgfyslg avtsfvadla vtqghplqvv mnlstyaflp rmmvvtspvp viacgvvhll aiilylfkyr clhnvlvgdg vfssafflry faegklregv sqscgmshes ltgalamrlt dedldfltkw tdfkcfvsas nmrnaagqfi eaayakalri elaqlvqvdk vrgtmaklea fadtvapqls pgdivvalgh tpvgsifdlk vgstkhtlqa ietrvlagsk mtvarvvdpt papppvpvpi pLPPKVLENG PNAWGDEDRL NKKKRrrmea vGIFVMDGKK YQKfwdknsg dvfyeevhis tdeweclrtg dpvdfdpetg iqcghitied kvynvftsps grrflvpanp enrraqweaa klsveqalgm mnvdgeltak eleklkriid KLQGLTKEQC LNC
>A1E8J1_REM465
384-422, 814-843, 970-984, 1127-1153
msgildrctc tpnarvfvae gqvyctrcls arsllplnlq vpelgvlglf yrpeeplrwt lprafptvec spagacwlsa ifpiarmtsg nlnfqqrmvr vaaeiyragq ltptvlktlq vyergcrwyp ivgpvpgvgv yanslhvsdk pfpgathvlt nlplpqrpkp edfcpfecam advydidrga vmyvaggkvs waprggnevk fepvpkelkl vanrlhtsfp phhvvdmsrf tfmtpgsgvs mrveyqhgcl padtvpegnc wwrlfdslpp evqykeirha nqfgyqtkhg vpgkylqrrl qvnglravtd thgpiviqyf svkeswirhl klveepslpg fedllrirve pntsplagkd ekifrfgshk wygAGKRARK TRSGATTMVA HHASSAHETR QATKHEGAGA NKaehlkrys ppaegncgwh cisaianrmv nsnfettlpe rvrpsddwat dedlvntiqi lrlpaaldrn gacgsakyvl klegehwtvs vipgmsptll plecvqgcce hkgglvspda veisgfdpac ldrlakvmhl psstipaala elsddsnrpv spaattwtvs qfyarhrggd hhdqvclgki islcqviedc cchqnktnra tpeevtakid qylrgatsle eclaklervs ppsaadtsfd wnvvlpgvva anqtteqphv nscctlvppv tqeplgkdsv pltafslsnc yypaqgdevh hrerlnsvls kleevvleey glmstglgpr pvlpsgldel kdqmeedllk lantqatsem mawaaeqvdl kawvksyprw tppPPPPRVQ PRRTKSVKSL PEGKPVPAPR RKVrsdcgsp vlmgdnvpng seetvggpln fptpsepmtp msepvlvpas rrvpklmtpl sgsapvpapr rtvtttlthq depldlsass qteyeafpla psqnmgilea ggqeveevls eisdilndtN PAPVSSSSSL SSVKitrpky saqaiidsgg pcsghlqkek eaclsimrea cdasklgdpa tqewlsrmwd rvdmltwrnt sayqafriln grfeflpkmi letppphpcg fvmlprtpap svsaesdlti gsvatedvpr ilgkigdtde lldrgpSVPS KGEPVCDQPA KDPRMSPRES DESmiappad tggvgsftdl pssdgvdvgg ggplrtvktk agrlldqlsc qvfslvshlp iffshlfksd sgyspgdwgf aaftlfclfl cysypffgfa pllgvfsgss rrvrmgvfgc wlafavglfk pvsdpvgtac efdspecrnv lhsfellkpw dpvrslvvgp vglglailgr llggaryiwh fllrlgivad cilagayvls qgrckkcwgs cvrtapneia fnvfpftrat rsslidlcdr fcapkgmdpi flatgwrgcw tgrspieqps ekpiafaqld ekritartvv tqpydpnqav kclrvlqagg amvaeavpkv vkvsaipfra pffpagvkvd pecrivvdpd tfttalrsgy stanlvlgtg dfaqlnglki rqiskpsggg phliaalhva rsmalhmlag vyvtavgscg tgtndpwctn pfavpgygpg slctsrlcis qhgltlplta lvagfglqei alvvlifvsi ggmahrlsck admlcillai asyvwvpltw llcvfpcwlr wfslhpltil wlvfflisvn ipsgilavvl lvslwllgry tniaglvtpy dihhytsgpr gvaalatapd gtylaavrra altgrtmlft psqlgslleg afrtqkpsln tvnvvgssmg sggvftidgk ikcvtaahvl tgnsarvsgv gfnqmldfdv kgdfaiadcp nwqgvapkaq fcedgwtgra ywltssgvep gvigngfafc ftacgdsgsp viteagelvg vhtgsnkqgg givtrpsgqf cnvkpiklse lseffagpkv plgdvkigsh iikdtcevps dlcallaakp elegglstvq llcvffllwr mmghawtplv avgffilnei lpavlvrsvf sfgmfvlswl tpwsaqvlmi rlltaalnrn rwslgfyslg avtsfvadla vtqghplqvv mnlstyaflp rmmvvtspvp viacgvvhll aiilylfkyr clhnvlvgdg vfssafflry faegklregv sqscgmshes ltgalamrlt dedldfltkw tdfkcfvsas nmrnaagqfi eaayakalri elaqlvqvdk vrgtmaklea fadtvapqls pgdivvalgh tpvgsifdlk vgstkhtlqa ietrvlagsk mtvarvvdpt papppvpvpi plppkvleng pnawgdedrl nkkkrrrmea vgifvmdgkk yqkfwdknsg dvfyeevhis tdeweclrtg dpvdfdpetg iqcghitied kvynvftsps grrflvpanp enrraqweaa klsveqalgm mnvdgeltak eleklkriid klqgltkeqc lnc
| JOB-ID | A1E8J1_152307ZwqUW38AAQEAAGAHug0AAABF |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | A1E8J1 |
| Description | tr|A1E8J1|A1E8J1_PRRSV Non-structural protein OS=Porcine reproductive and respiratory syndrome virus OX=28344 GN=ORF1a PE=1 SV=1 |
| Title/ID | none |
| Sequence length | 2473 |
| Download predictions | smoothed scores raw scores |