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>B6VGX5_LOOPS
1-16, 28-92, 107-114, 125-187, 196-215, 225-306, 315-326, 342-394, 414-439, 450-472, 504-549, 557-586, 595-604, 621-632, 657-732, 748-768, 805-951, 966-1007, 1021-1030, 1062-1188, 1206-1230, 1241-1263, 1278-1321, 1360-1391, 1399-1435, 1448-1459, 1482-1513, 1523-1552, 1576-1617, 1673-1686, 1720-1752, 1763-1812, 1821-1868, 1874-1885, 1892-1969, 1978-1986, 2080-2087, 2094-2112, 2134-2143, 2153-2169, 2242-2253, 2258-2275, 2292-2330, 2354-2423, 2464-2473
MSGILDRCTC TPNARVfvae gqvyctrCLS ARSLLPLNLQ VPELGVLGLF YRPEEPLRWT LPRAFPTVEC SPAGACWLSA IFPIARMTSG NLnfqqrmvr vaaeiyRAGQ LTPTvlktlq vyerGCRWYP IVGPVPGVGV YANSLHVSDK PFPGATHVLT NLPLPQRPKP EDFCPFECAM ADVYDIGrga vmyvaGGKVS WAPRGGNEVK FEPVPkelkl vanrLHTSFP PHHVVDMSRF TFMTPGSGVS MRVEYQYGCL PADSVPEGNC WWRLFDSLPP EVQYKEIRHA NQSGYQTKHG VPGKYLqrrl qvngLRAVTD THGPIViqyf svkeswirhl rLVEEPSLPG FEDLLRIRVE PNTSPLAGKD EKIFRFGSHK WYGAGKRARK TRSGattmva hhassahetr qarKHEGAGA NKAEHLKRYS PPAEGNCGWh cisaianrmV NSNFETTLPE RVRPSDDWAT DEdlvntiqi lrlaaaldrn gacgsakyvl kleGEHWTVS VIPGMSPTLL PLECVQGCCE HKGGLVSPDA VEISGFDPAc ldrlakVMHL PSSTIPAALA ELSDDSNRPV SPAATTwtvs qfyaRHRGGD HHDQvclgki islcqviedc CCHQNKTNRA TPeevaakid qylrgatsle eclaklERVS PPSAADTSFD WNVVLPGVEP ANQTTEQPHV NSCCTLVPPV TQEPLGKDSV PLTAFSLSNC YYPAQGDEVH HRerlnsvls klegvvlEEY GLMSTGLGPR PVLPSGLDel kdqmeedllk lantqatsem mawaaeqvdl kawvKSYPRW TPPPPAPRVQ PRRTKSVKSL PEGKPVPAPR RKVRSDCGSP VLMGDNVPNG SEETVGDPLN FPTPSEPMTP MSEPVLMPAS RRVPKLMKPL SGSAPVPAPR RPVTTTLTHQ DEPLDLSASS QTEYEAFPLA PSQNMGILEA Ggqeveevls eisdiLNDTN PAPVSSSSSL SSVKITRPKY SAQAIIDSGG PCSGHLQkek eaclsimrea CDASKLGDPA tqqwlsrmwd rvdmltwrnt sayqafriln gRFEFLPKMI LETPPPHPCG FVMLPRTPAP SVSAESDLTI GSVATEDVPR ILGKIGDTDE LLDRGPSAGS KGGPVCDQPA KDPRMSPRES DESMIVPPAD TGGVGSFTDL PSSDGVDVDW GGPLRTVKtk agrlldqlsc qvfslVSHLP IFFSHLFKSD SGYSPGDWGF aaftlfclfl CYSYPFYGFA PLLGVFSGSS RRVrmgvfgc wlafavgLFK PVSDPVGTAC EFDSPECRNV LHSFELLKPW DPVRSLVVGP Vglglailgr llrgaryiwh fmlrlgivad cilagayvlS QGRCKKCWGS CVRTAPNEIA FNVFPFTRAT RsslidlcDR FCAPKGMDPI FLATGWRGCW TGRSPIEQPS EKPIAfaqld ekritarTVV AQPYDPNQAv kclrvlqagg amvaeavprv vKVSAIPFRA PFFPAGVKVD PECRIVVDPD TFTtalrsgy stANLVLGTG DSAQLNGLKI RQISKPSGGG PHliaalhva csmalhmlag vyvtaVGSCG TGTNDPWCTN PFAVPGYGPG SLCTSRLCIS QHGLTLPlta lvagfglqei alvvlifvsi ggmahrlsck admlcillai asyvwvpltw llCVFPCWLR WFSLHPltil wlvfflisvn ipsgilavvl lvslwllgrY TNIAGLVTPY DIHHYTSGPR GVAALATAPD GTylaavrra alTGRTMLFT PSQLGSLLEG AFRTQKPSLN TVNVVGSSMG SGGVFTIDGK IKcvtaahvl TGNSARVSGV GFNQMLDFDV KGDFAIADCP NWQGVAPKAQ FCEDGWTGra ywlTSSGVEP GVIGNgfafc fTACGDSGSP VITEAGELVG VHTGSNKQGG GIVTRPSGQF CNVKPIKLSE LSDIFAGPKV PLGDVKIGSH IIKDTCEVPs dlcallaAKP ELEGGLstvq llcvffllwr mmghawtplv avgffilnei lpavlvrsvf sfgmfvlswl tpwsaqhlmi rlltaalnrn rwslgfyslg avtsfvadlA VTQGHPLqvv mtlSTYAFLP RMMVVTSPVP VIacgvvhll aiilylfkyr clhNVLVGDG VFSsafflry faEGKLREGV SQSCGMSHEs ltgalamrlt dedldfltkw tdfkcfvsas nmrnaagqfi eaayakalri elaqlvqvdk vrgtmaklea fADTVAPQLS PGDivvaLGH TPVGSIFDLK VGSAKhtlqa ietrvlagsk mTVARVVDPT PAPPPVPVPI PLPPKVLENG PNAWGDEDRL nkkkrrrmea vgifvmdgkk yqkFWDKNSG DGFYEEVHIS TDEWECLRTG DPVDFDPETG IQCGHITIED KVYNVFTSPS GRRFLVPANP ENRraqweaa klsveqalgm mnvdgeltak eleklkriid klqGLTKEQC LNC
>B6VGX5_HOTLOOPS
1-15, 105-115, 229-239, 290-304, 316-324, 346-386, 403-412, 461-471, 626-634, 752-761, 810-851, 898-913, 967-984, 1099-1141, 1169-1182, 1449-1458, 1492-1503, 2312-2335, 2342-2353, 2461-2473
MSGILDRCTC TPNARvfvae gqvyctrcls arsllplnlq vpelgvlglf yrpeeplrwt lprafptvec spagacwlsa ifpiarmtsg nlnfqqrmvr vaaeIYRAGQ LTPTVlktlq vyergcrwyp ivgpvpgvgv yanslhvsdk pfpgathvlt nlplpqrpkp edfcpfecam advydigrga vmyvaggkvs waprggnevk fepvpkelkl vanrlhtsFP PHHVVDMSRf tfmtpgsgvs mrveyqygcl padsvpegnc wwrlfdslpp evqykeirhA NQSGYQTKHG VPGKylqrrl qvnglRAVTD THGPiviqyf svkeswirhl rlveePSLPG FEDLLRIRVE PNTSPLAGKD EKIFRFGSHK WYGAGKrark trsgattmva hhASSAHETR QArkhegaga nkaehlkrys ppaegncgwh cisaianrmv nsnfettlpe RVRPSDDWAT Dedlvntiqi lrlaaaldrn gacgsakyvl klegehwtvs vipgmsptll plecvqgcce hkgglvspda veisgfdpac ldrlakvmhl psstipaala elsddsnrpv spaattwtvs qfyarhrggd hhdqvclgki islcqviedc cchqnKTNRA TPEEvaakid qylrgatsle eclaklervs ppsaadtsfd wnvvlpgvep anqtteqphv nscctlvppv tqeplgkdsv pltafslsnc yypaqgdevh hrerlnsvls klegvvleey gLMSTGLGPR Pvlpsgldel kdqmeedllk lantqatsem mawaaeqvdl kawvksyprW TPPPPAPRVQ PRRTKSVKSL PEGKPVPAPR RKVRSDCGSP Vlmgdnvpng seetvgdpln fptpsepmtp msepvlmpas rrvpklmKPL SGSAPVPAPR RPVtttlthq depldlsass qteyeafpla psqnmgilea ggqeveevls eisdilNDTN PAPVSSSSSL SSVKitrpky saqaiidsgg pcsghlqkek eaclsimrea cdasklgdpa tqqwlsrmwd rvdmltwrnt sayqafriln grfeflpkmi letppphpcg fvmlprtpap svsaesdlTI GSVATEDVPR ILGKIGDTDE LLDRGPSAGS KGGPVCDQPA Kdprmspres desmivppad tggvgsftDL PSSDGVDVDW GGplrtvktk agrlldqlsc qvfslvshlp iffshlfksd sgyspgdwgf aaftlfclfl cysypfygfa pllgvfsgss rrvrmgvfgc wlafavglfk pvsdpvgtac efdspecrnv lhsfellkpw dpvrslvvgp vglglailgr llrgaryiwh fmlrlgivad cilagayvls qgrckkcwgs cvrtapneia fnvfpftrat rsslidlcdr fcapkgmdpi flatgwrgcw tgrspieqps ekpiafaqld ekritartVV AQPYDPNQav kclrvlqagg amvaeavprv vkvsaipfra pFFPAGVKVD PECrivvdpd tfttalrsgy stanlvlgtg dsaqlnglki rqiskpsggg phliaalhva csmalhmlag vyvtavgscg tgtndpwctn pfavpgygpg slctsrlcis qhgltlplta lvagfglqei alvvlifvsi ggmahrlsck admlcillai asyvwvpltw llcvfpcwlr wfslhpltil wlvfflisvn ipsgilavvl lvslwllgry tniaglvtpy dihhytsgpr gvaalatapd gtylaavrra altgrtmlft psqlgslleg afrtqkpsln tvnvvgssmg sggvftidgk ikcvtaahvl tgnsarvsgv gfnqmldfdv kgdfaiadcp nwqgvapkaq fcedgwtgra ywltssgvep gvigngfafc ftacgdsgsp viteagelvg vhtgsnkqgg givtrpsgqf cnvkpiklse lsdifagpkv plgdvkigsh iikdtcevps dlcallaakp elegglstvq llcvffllwr mmghawtplv avgffilnei lpavlvrsvf sfgmfvlswl tpwsaqhlmi rlltaalnrn rwslgfyslg avtsfvadla vtqghplqvv mtlstyaflp rmmvvtspvp viacgvvhll aiilylfkyr clhnvlvgdg vfssafflry faegklregv sqscgmshes ltgalamrlt dedldfltkw tdfkcfvsas nmrnaagqfi eaayakalri elaqlvqvdk vrgtmaklea fadtvapqls pgdivvalgh tpvgsifdlk vgsakhtlqa ietrvlagsk mtvarvvdpt papppvpvpi pLPPKVLENG PNAWGDEDRL NKKKRrrmea vGIFVMDGKK YQKfwdknsg dgfyeevhis tdeweclrtg dpvdfdpetg iqcghitied kvynvftsps grrflvpanp enrraqweaa klsveqalgm mnvdgeltak eleklkriid KLQGLTKEQC LNC
>B6VGX5_REM465
384-422, 814-843, 970-984, 1127-1153
msgildrctc tpnarvfvae gqvyctrcls arsllplnlq vpelgvlglf yrpeeplrwt lprafptvec spagacwlsa ifpiarmtsg nlnfqqrmvr vaaeiyragq ltptvlktlq vyergcrwyp ivgpvpgvgv yanslhvsdk pfpgathvlt nlplpqrpkp edfcpfecam advydigrga vmyvaggkvs waprggnevk fepvpkelkl vanrlhtsfp phhvvdmsrf tfmtpgsgvs mrveyqygcl padsvpegnc wwrlfdslpp evqykeirha nqsgyqtkhg vpgkylqrrl qvnglravtd thgpiviqyf svkeswirhl rlveepslpg fedllrirve pntsplagkd ekifrfgshk wygAGKRARK TRSGATTMVA HHASSAHETR QARKHEGAGA NKaehlkrys ppaegncgwh cisaianrmv nsnfettlpe rvrpsddwat dedlvntiqi lrlaaaldrn gacgsakyvl klegehwtvs vipgmsptll plecvqgcce hkgglvspda veisgfdpac ldrlakvmhl psstipaala elsddsnrpv spaattwtvs qfyarhrggd hhdqvclgki islcqviedc cchqnktnra tpeevaakid qylrgatsle eclaklervs ppsaadtsfd wnvvlpgvep anqtteqphv nscctlvppv tqeplgkdsv pltafslsnc yypaqgdevh hrerlnsvls klegvvleey glmstglgpr pvlpsgldel kdqmeedllk lantqatsem mawaaeqvdl kawvksyprw tppPPAPRVQ PRRTKSVKSL PEGKPVPAPR RKVrsdcgsp vlmgdnvpng seetvgdpln fptpsepmtp msepvlmpas rrvpklmkpl sgsapvpapr rpvtttlthq depldlsass qteyeafpla psqnmgilea ggqeveevls eisdilndtN PAPVSSSSSL SSVKitrpky saqaiidsgg pcsghlqkek eaclsimrea cdasklgdpa tqqwlsrmwd rvdmltwrnt sayqafriln grfeflpkmi letppphpcg fvmlprtpap svsaesdlti gsvatedvpr ilgkigdtde lldrgpSAGS KGGPVCDQPA KDPRMSPRES DESmivppad tggvgsftdl pssdgvdvdw ggplrtvktk agrlldqlsc qvfslvshlp iffshlfksd sgyspgdwgf aaftlfclfl cysypfygfa pllgvfsgss rrvrmgvfgc wlafavglfk pvsdpvgtac efdspecrnv lhsfellkpw dpvrslvvgp vglglailgr llrgaryiwh fmlrlgivad cilagayvls qgrckkcwgs cvrtapneia fnvfpftrat rsslidlcdr fcapkgmdpi flatgwrgcw tgrspieqps ekpiafaqld ekritartvv aqpydpnqav kclrvlqagg amvaeavprv vkvsaipfra pffpagvkvd pecrivvdpd tfttalrsgy stanlvlgtg dsaqlnglki rqiskpsggg phliaalhva csmalhmlag vyvtavgscg tgtndpwctn pfavpgygpg slctsrlcis qhgltlplta lvagfglqei alvvlifvsi ggmahrlsck admlcillai asyvwvpltw llcvfpcwlr wfslhpltil wlvfflisvn ipsgilavvl lvslwllgry tniaglvtpy dihhytsgpr gvaalatapd gtylaavrra altgrtmlft psqlgslleg afrtqkpsln tvnvvgssmg sggvftidgk ikcvtaahvl tgnsarvsgv gfnqmldfdv kgdfaiadcp nwqgvapkaq fcedgwtgra ywltssgvep gvigngfafc ftacgdsgsp viteagelvg vhtgsnkqgg givtrpsgqf cnvkpiklse lsdifagpkv plgdvkigsh iikdtcevps dlcallaakp elegglstvq llcvffllwr mmghawtplv avgffilnei lpavlvrsvf sfgmfvlswl tpwsaqhlmi rlltaalnrn rwslgfyslg avtsfvadla vtqghplqvv mtlstyaflp rmmvvtspvp viacgvvhll aiilylfkyr clhnvlvgdg vfssafflry faegklregv sqscgmshes ltgalamrlt dedldfltkw tdfkcfvsas nmrnaagqfi eaayakalri elaqlvqvdk vrgtmaklea fadtvapqls pgdivvalgh tpvgsifdlk vgsakhtlqa ietrvlagsk mtvarvvdpt papppvpvpi plppkvleng pnawgdedrl nkkkrrrmea vgifvmdgkk yqkfwdknsg dgfyeevhis tdeweclrtg dpvdfdpetg iqcghitied kvynvftsps grrflvpanp enrraqweaa klsveqalgm mnvdgeltak eleklkriid klqgltkeqc lnc
| JOB-ID | B6VGX5_222415Zz@zD38AAQEAAGD1568AAABW |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | B6VGX5 |
| Description | tr|B6VGX5|B6VGX5_PRRSV Non-structural protein OS=Porcine reproductive and respiratory syndrome virus OX=28344 GN=ORF1a PE=1 SV=1 |
| Title/ID | none |
| Sequence length | 2473 |
| Download predictions | smoothed scores raw scores |