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>O92972_LOOPS
1-122, 132-146, 161-173, 186-193, 202-212, 220-258, 289-316, 380-409, 419-433, 446-625, 645-692, 778-789, 857-871, 902-911, 946-960, 984-1036, 1046-1057, 1079-1176, 1187-1245, 1267-1327, 1348-1396, 1420-1430, 1440-1533, 1543-1553, 1567-1584, 1595-1605, 1613-1627, 1688-1699, 1709-1718, 1776-1786, 1795-1805, 1816-1827, 1869-1879, 1884-1891, 1903-1911, 1924-1940, 1965-1978, 1995-2078, 2098-2145, 2154-2182, 2189-2225, 2238-2265, 2279-2336, 2350-2410, 2420-2475, 2507-2529, 2547-2588, 2601-2617, 2627-2653, 2680-2711, 2727-2735, 2762-2811, 2819-2830, 2865-2879, 2888-2900, 2909-2919, 2932-2941, 2952-2991, 3002-3010
MSTNPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KASERSQPRG RRQPIPKARR PEGRAWAQPG YPWPLYGNEG LGWAGWLLSP RGSRPSWGPT DPRRRSRNLG KVidtltcgf aDLMGYIPLV GAPLGGaara lahgvrvled GVNYATGNLP GCSfsiflla llsclTIPAS AYEvrnvsgi yHVTNDCSNS SIvyeaadvI MHTPGCVPCV REGNSSRCWV ALTPTLAARN ASVPTTTIrr hvdllvgtaa fcsamyvgdl cgsiflvsQL FTFSPRRHET VQDCNCSIYP GHVSGHrmaw dmmmnwsptt alvvsqllri pqavvdmvag ahwgvlagla yysmvgnwak vlivallfaG VDGETHTTGR VAGHTTSGFT SLFSSGASQk iqlvntngSW HINRTALNCN DSLqtgffaa lfyahKFNSS GCPERMASCR PIDWFAQGWG PITYTKPNSS DQRPYCWHYA PRPCGVVPAS QVCGPVYCFT PSPVVVGTTD RSGVPTYSWG ENETDVMLLN NTRPPQGNWF GCTWMNSTGF TKTCGGPPCN IGGVGNRTLI CPTDCFRKHP EATYTKCGSG PWLTPRCLVD YPYRLWHYPC TLNFSifkvr myvggvehrl naacNWTRGE RCNLEDRDRS ELSPLLLSTT EWQILPCAFT TLPALSTGLI HLhqnivdvq ylygvgsafv sfaikweyil llfllladar vcaclwmmll iaqaeaalen lvvlnaasva gahgilsflv ffcaawyIKG RLAPGAAYAf ygvwplllll lalpprayal dremaascgg avlvglvflt lspyykvflt rliwwlqyfi traeahMQVW VPPLNVRGGR Daiilltcav hpelifditk lllailgplm vLQAGITRVP Yfvraqglir acmlvrkvag ghyvqmafmk lgaltGTYVY NHLTPLRDWA haglrdlava vepvvfsame tkvITWGADT AACGDIILGL PVSARRGKEI FLGPADSLEG QGWRLLAPIT AYSQQTrgvl gciitSLTGR DKNQVEGevq vvstatqsfl atcingvcWT VYHGAGSKTL AGPKGPITQM YTNVDLDLVG WQAPPGARSM TPCSCGSSDL YLVTRHADVI PVRRRGDSRG SLLSPRPVSY LKGSSGGPLL CPSGHVvgvf raavctRGVA KAVDFIPVES METTMRSPVF TDNSSPPAVP QTFQVAHLHA PTGSGKSTKV PAAYAaqgyk vlvlnpsvaa tlgfgaYMSK AHGIDPNIRT GVRTITTGGS ITYSTYGKFL ADGGCSGGAY DIIICDECHS TDSTTILgig tvldqaetag arlvvlaTAT PPGSVTVPHP NIEEIGLSNN GEIPFYGKAI PIEAIKGGRH LIFCHSkkkc delaakltgl glnavayyrG LDVSVIPPIG dvvvvatdaL MTGFTGDFDS VIDCNTCVTQ TVDFSLDPTF TIETTTVPQD AVSRSQRRGR TGRGRSGIYR FVTPGERPSG MFDSSVLCEC YDAGCAWYEL TPAetsvrlr ayLNTPGLPV CQDhlefwes vftgltHIDA HFLSQTKQAG DNFPylvayq atvcARAQAP PPSWDqmwkc liRLKPTLHG PTPLLYRlga vqnevilthp itkyimacms adlevvtstw vlvggvlaal aayclttgsv vivgriiLSG KPAVVPDREv lyqefdemEE CASQLPYIeq gmqlaeqfkq kalgllqtat kqaeaaapvv eskwraletf wakhmwnfis giqylAGLST LPGNPAiasl maftASITSP LTTQNtllfn ilggwVAAQL APPSAASafv gagiagaavg siglgkvlvd ilagygagva galvafkvMS GEVPSTEDLv nllPAILSPG Alvvgvvcaa ilRRHVGPGE Gavqwmnrli afaSRGNHVS PTHYVPESDA aarvtqilss ltitqllkrl hqwiNEDCST PCSGSWLRdv wdwictvltd fktwLQSKLL PRLPGVPFLS CQRGYKGVWR GDGIMQTTCP CGAQIAGHVK NGSMRIVGPR TCSNTWHGTF PINAYTTGPC TPSPAPNYsr alwrvaaeey vevtrvgDFH YVTGMTTDNV KCPCQVPAPE FFTEVDGVRL HRYAPACKPL LREDVtfqvg lnqYLVGSQL PCEPEPDVTV LTSMLTDPSH ITaetakrRL ARGSPPSLAS SSASQLSAPS LKATCTTHHD SPDADliean llwrqemGGN ITRVESENKV VILDSFEPLH AEGDEreisv aaeilrksRK FPSALPIWAR PDYNPPLLES WKDPDYVPPV VHGCPLPPTK APPIPPPRRK RTVVLTesnv ssalaelatK TFGSSGSSAV DSGTATALPD LASDDGDKGS DVESYSSMPP LEGEPGDPDL SDGSWSTVSE easedvvccS MSYTWTGALI TPCAAEESKL PINPLSNSLL RHHNMVYATT SRSASLRQKK VTFDRlqvld dhyrdvlkem kakastvkak llsieeACKL TPPHSAKSKF GYGAKDVRNl ssravnhirs vwedllEDTE TPIDTTIMAK SEVFCVQPEK GGRKPARLIV FPDLGVRVce kmalydvvst LPQAVMGSSY GFQYSPKqrv eflvntWKSK KCPMGFSYDT RCFDSTVTES DIRveesiyq ccdlapearq airslterlY IGGPLTNSKG QNCGYRRCRA SGVLTTSCGN Tltcylkata acraakLQDC TMLVNgddlv vicesagtqe daaalrafte aMTRYSAPPG DPPQPEYDLE LITSCSSNVS VAHDASGKRV YYLTRDPTTP LaraawetAR HTPINSWLGN iimyaptlwa rmilmthffs illaqeqlek aldcQIYGAC YSIEPLDLPq iierlhgLSA FTLHSYSPGE inrvasclRK LGVPPLRTWr hrarsvrakl lSQGGRAATC Grylfnwavr tKLKLTPIPA ASQLDLSGWF VAGYSGGDIY HSLSRARPRW Fplcllllsv gVGIYLLPNR
>O92972_HOTLOOPS
1-77, 103-120, 245-259, 592-604, 642-658, 1029-1037, 1137-1156, 1270-1282, 1349-1359, 1471-1510, 1687-1695, 1999-2010, 2256-2266, 2278-2290, 2317-2329, 2350-2362, 2388-2401, 2459-2477, 2506-2525, 2565-2581, 2630-2643, 2681-2694, 2789-2801, 2819-2830, 2912-2922, 2929-2941, 3000-3010
MSTNPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KASERSQPRG RRQPIPKARR PEGRAWAqpg ypwplygneg lgwagwllsp rgSRPSWGPT DPRRRSRNLG kvidtltcgf adlmgyiplv gaplggaara lahgvrvled gvnyatgnlp gcsfsiflla llscltipas ayevrnvsgi yhvtndcsns sivyeaadvi mhtpgcvpcv regnssrcwv altpTLAARN ASVPTTTIRr hvdllvgtaa fcsamyvgdl cgsiflvsql ftfsprrhet vqdcncsiyp ghvsghrmaw dmmmnwsptt alvvsqllri pqavvdmvag ahwgvlagla yysmvgnwak vlivallfag vdgethttgr vaghttsgft slfssgasqk iqlvntngsw hinrtalncn dslqtgffaa lfyahkfnss gcpermascr pidwfaqgwg pitytkpnss dqrpycwhya prpcgvvpas qvcgpvycft pspvvvgttd rsgvptyswg enetdvmlln ntrppqgnwf gctwmnstgf tktcggppcn iggvgnrtli cptdcfrkhp eATYTKCGSG PWLTprclvd ypyrlwhypc tlnfsifkvr myvggvehrl nAACNWTRGE RCNLEDRDrs elsplllstt ewqilpcaft tlpalstgli hlhqnivdvq ylygvgsafv sfaikweyil llfllladar vcaclwmmll iaqaeaalen lvvlnaasva gahgilsflv ffcaawyikg rlapgaayaf ygvwplllll lalpprayal dremaascgg avlvglvflt lspyykvflt rliwwlqyfi traeahmqvw vpplnvrggr daiilltcav hpelifditk lllailgplm vlqagitrvp yfvraqglir acmlvrkvag ghyvqmafmk lgaltgtyvy nhltplrdwa haglrdlava vepvvfsame tkvitwgadt aacgdiilgl pvsarrgkei flgpadsleg qgwrllapIT AYSQQTRgvl gciitsltgr dknqvegevq vvstatqsfl atcingvcwt vyhgagsktl agpkgpitqm ytnvdldlvg wqappgarsm tpcscgssdl ylvtrhADVI PVRRRGDSRG SLLSPRpvsy lkgssggpll cpsghvvgvf raavctrgva kavdfipves mettmrspvf tdnssppavp qtfqvahlha ptgsgkstkv paayaaqgyk vlvlnpsvaa tlgfgaymsK AHGIDPNIRT GVrtittggs itystygkfl adggcsggay diiicdechs tdsttilgig tvldqaetag arlvvlatAT PPGSVTVPHp nieeiglsnn geipfygkai pieaikggrh lifchskkkc delaakltgl glnavayyrg ldvsvippig dvvvvatdal mtgftgdfds vidcntcvtq tvdfsldptf TIETTTVPQD AVSRSQRRGR TGRGRSGIYR FVTPGERPSG mfdssvlcec ydagcawyel tpaetsvrlr aylntpglpv cqdhlefwes vftglthida hflsqtkqag dnfpylvayq atvcaraqap ppswdqmwkc lirlkptlhg ptpllyrlga vqnevilthp itkyimacms adlevvtstw vlvggvlaal aayclttgsv vivgriILSG KPAVVpdrev lyqefdemee casqlpyieq gmqlaeqfkq kalgllqtat kqaeaaapvv eskwraletf wakhmwnfis giqylaglst lpgnpaiasl maftasitsp lttqntllfn ilggwvaaql appsaasafv gagiagaavg siglgkvlvd ilagygagva galvafkvms gevpstedlv nllpailspg alvvgvvcaa ilrrhvgpge gavqwmnrli afasrgnhvs pthyvpesda aarvtqilss ltitqllkrl hqwinedcst pcsgswlrdv wdwictvltd fktwlqskLL PRLPGVPFLS cqrgykgvwr gdgimqttcp cgaqiaghvk ngsmrivgpr tcsntwhgtf pinayttgpc tpspapnysr alwrvaaeey vevtrvgdfh yvtgmttdnv kcpcqvpape fftevdgvrl hryapackpl lredvtfqvg lnqylvgsql pcepepdvtv ltsmltdpsh itaetakrrl argsppslas ssasqlsaps lkatctthhd spdadliean llwrqemggn itrvesenkv vildsFEPLH AEGDEReisv aaeilrkSRK FPSALPIWAR pdynpplles wkdpdyvppv vhgcplPPTK APPIPPPRRk rtvvltesnv ssalaelatK TFGSSGSSAV DSgtatalpd lasddgdkgs dvesyssMPP LEGEPGDPDL Sdgswstvse easedvvccs msytwtgali tpcaaeeskl pinplsnsll rhhnmvyaTT SRSASLRQKK VTFDRLQvld dhyrdvlkem kakastvkak llsieEACKL TPPHSAKSKF GYGAKdvrnl ssravnhirs vwedlledte tpidttimak sevfCVQPEK GGRKPARLIV Fpdlgvrvce kmalydvvst lpqavmgssy gfqyspkqrv eflvntwksK KCPMGFSYDT RCFdstvtes dirveesiyq ccdlapearq airslterly IGGPLTNSKG QNCGyrrcra sgvlttscgn tltcylkata acraaklqdc tmlvngddlv vicesagtqe daaalrafte amtrysappg dppqpeydle litscssnVS VAHDASGKRV Yyltrdpttp laraawetAR HTPINSWLGN iimyaptlwa rmilmthffs illaqeqlek aldcqiygac ysiepldlpq iierlhglsa ftlhsyspge inrvasclrk lGVPPLRTWR HRarsvraKL LSQGGRAATC Grylfnwavr tklkltpipa asqldlsgwf vagysggdiy hslsrarprw fplcllllsV GVGIYLLPNR
>O92972_REM465
1-17, 46-75, 103-113, 1479-1492, 1739-1750, 2187-2216, 2351-2362, 2375-2414
MSTNPKPQRK TKRNTNRrpq dvkfpgggqi vggvyllprr gprlgVRATR KASERSQPRG RRQPIPKARR PEGRAwaqpg ypwplygneg lgwagwllsp rgSRPSWGPT DPRrrsrnlg kvidtltcgf adlmgyiplv gaplggaara lahgvrvled gvnyatgnlp gcsfsiflla llscltipas ayevrnvsgi yhvtndcsns sivyeaadvi mhtpgcvpcv regnssrcwv altptlaarn asvptttirr hvdllvgtaa fcsamyvgdl cgsiflvsql ftfsprrhet vqdcncsiyp ghvsghrmaw dmmmnwsptt alvvsqllri pqavvdmvag ahwgvlagla yysmvgnwak vlivallfag vdgethttgr vaghttsgft slfssgasqk iqlvntngsw hinrtalncn dslqtgffaa lfyahkfnss gcpermascr pidwfaqgwg pitytkpnss dqrpycwhya prpcgvvpas qvcgpvycft pspvvvgttd rsgvptyswg enetdvmlln ntrppqgnwf gctwmnstgf tktcggppcn iggvgnrtli cptdcfrkhp eatytkcgsg pwltprclvd ypyrlwhypc tlnfsifkvr myvggvehrl naacnwtrge rcnledrdrs elsplllstt ewqilpcaft tlpalstgli hlhqnivdvq ylygvgsafv sfaikweyil llfllladar vcaclwmmll iaqaeaalen lvvlnaasva gahgilsflv ffcaawyikg rlapgaayaf ygvwplllll lalpprayal dremaascgg avlvglvflt lspyykvflt rliwwlqyfi traeahmqvw vpplnvrggr daiilltcav hpelifditk lllailgplm vlqagitrvp yfvraqglir acmlvrkvag ghyvqmafmk lgaltgtyvy nhltplrdwa haglrdlava vepvvfsame tkvitwgadt aacgdiilgl pvsarrgkei flgpadsleg qgwrllapit aysqqtrgvl gciitsltgr dknqvegevq vvstatqsfl atcingvcwt vyhgagsktl agpkgpitqm ytnvdldlvg wqappgarsm tpcscgssdl ylvtrhadvi pvrrrgdsrg sllsprpvsy lkgssggpll cpsghvvgvf raavctrgva kavdfipves mettmrspvf tdnssppavp qtfqvahlha ptgsgkstkv paayaaqgyk vlvlnpsvaa tlgfgaymsk ahgidpnirt gvrtittggs itystygkfl adggcsggay diiicdechs tdsttilgig tvldqaetag arlvvlatat ppgsvtvphp nieeiglsnn geipfygkai pieaikggrh lifchskkkc delaakltgl glnavayyrg ldvsvippig dvvvvatdal mtgftgdfds vidcntcvtq tvdfsldptf tietttvpQD AVSRSQRRGR TGrgrsgiyr fvtpgerpsg mfdssvlcec ydagcawyel tpaetsvrlr aylntpglpv cqdhlefwes vftglthida hflsqtkqag dnfpylvayq atvcaraqap ppswdqmwkc lirlkptlhg ptpllyrlga vqnevilthp itkyimacms adlevvtstw vlvggvlaal aayclttgsv vivgriilsg kpavvpdrev lyqefdemee casqlpyieq gmqlaeqfkq kalgllqtAT KQAEAAAPVV eskwraletf wakhmwnfis giqylaglst lpgnpaiasl maftasitsp lttqntllfn ilggwvaaql appsaasafv gagiagaavg siglgkvlvd ilagygagva galvafkvms gevpstedlv nllpailspg alvvgvvcaa ilrrhvgpge gavqwmnrli afasrgnhvs pthyvpesda aarvtqilss ltitqllkrl hqwinedcst pcsgswlrdv wdwictvltd fktwlqskll prlpgvpfls cqrgykgvwr gdgimqttcp cgaqiaghvk ngsmrivgpr tcsntwhgtf pinayttgpc tpspapnysr alwrvaaeey vevtrvgdfh yvtgmttdnv kcpcqvpape fftevdgvrl hryapackpl lredvtfqvg lnqylvgsql pcepepdvtv ltsmltdpsh itaetaKRRL ARGSPPSLAS SSASQLSAPS LKATCTthhd spdadliean llwrqemggn itrvesenkv vildsfeplh aegdereisv aaeilrksrk fpsalpiwar pdynpplles wkdpdyvppv vhgcplpptk appippprrk rtvvltesnv ssalaelatk TFGSSGSSAV DSgtatalpd lasdDGDKGS DVESYSSMPP LEGEPGDPDL SDGSWSTVSE EASEdvvccs msytwtgali tpcaaeeskl pinplsnsll rhhnmvyatt srsaslrqkk vtfdrlqvld dhyrdvlkem kakastvkak llsieeackl tpphsakskf gygakdvrnl ssravnhirs vwedlledte tpidttimak sevfcvqpek ggrkparliv fpdlgvrvce kmalydvvst lpqavmgssy gfqyspkqrv eflvntwksk kcpmgfsydt rcfdstvtes dirveesiyq ccdlapearq airslterly iggpltnskg qncgyrrcra sgvlttscgn tltcylkata acraaklqdc tmlvngddlv vicesagtqe daaalrafte amtrysappg dppqpeydle litscssnvs vahdasgkrv yyltrdpttp laraawetar htpinswlgn iimyaptlwa rmilmthffs illaqeqlek aldcqiygac ysiepldlpq iierlhglsa ftlhsyspge inrvasclrk lgvpplrtwr hrarsvrakl lsqggraatc grylfnwavr tklkltpipa asqldlsgwf vagysggdiy hslsrarprw fplcllllsv gvgiyllpnr
| JOB-ID | O92972_151321Zt8QkX8AAQEAABReBhYAAAAP |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | O92972 |
| Description | sp|O92972|POLG_HCVJ4 Genome polyprotein OS=Hepatitis C virus genotype 1b (strain HC-J4) OX=420174 PE=1 SV=2 |
| Title/ID | none |
| Sequence length | 3010 |
| Download predictions | smoothed scores raw scores |