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>P04587_LOOPS
1-30, 43-54, 64-72, 119-149, 162-183, 210-239, 249-260, 275-294, 349-358, 380-424, 446-513, 524-551, 569-585, 592-626, 642-673, 688-758, 767-777, 785-795, 811-853, 864-873, 886-896, 908-921, 944-962, 981-995, 1008-1021, 1029-1063, 1087-1098, 1105-1113, 1135-1145, 1181-1190, 1202-1227, 1241-1254, 1264-1281, 1293-1308, 1344-1355, 1386-1421, 1431-1447
MGARASVLSG GELDRWEKIR LRPGGKKKYK lkhivwasre leRFAVNPGL LETSegcrqi lgqLQPSLQT GSeelrslyn tvatlycvhq rieikdtkea ldkieeeqnk skkkaqqaAA DTGHSSQVSQ NYPIVQNIQG QMVHQAISPr tlnawvkvve eKAFSPEVIP MFSALSEGAT PQDlntmlnt vgghqaamqm lketineeaA EWDRVHPVHA GPIAPGQMRE PRGSDIAGTt stlqeqigWM TNNPPIPVGE iykrwiilgl nkivRMYSPT SILDIRQGPK EPFRdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtAC QGVGGPGHka rvlaeamsqv tnsttimmqR GNFRNQRKIV KCFNCGKEGH IARNCKAPRK KGCWKCGKEG HQMKdcterq anflredlaf lqgkaREFSS EQTRANSPTI SSEQTRANSP TRRELQVWGR DNNSPSEAGA DRQGTVSFNF PQITLWQRPL VTIkiggqlk ealLDTGADD TVLEEMSLPG RWKPKMIGGI Ggfikvrqyd qilieicgHK AIGTVLVGPT PVNIIgrnll tQIGCTLNFP ISPIETVPVK LKPGMDGPKV KQWPLTeeki kalveictem eKEGKISKIG PENPYNTPVF AIKKKDSTKW RKLvdfreln rrtqdfwEVQ LGIPHPAGLK KKKSVTVLDV GDAYFSVPLD EDFRKYTAFT IPSINNETPG SGYQYNVLPQ GWKGSPAIfq ssmtkiLEPF RKQNPDIviy qymdDLYVGS DLEIGqhrtk ieelrqhllr WGFTTPDKKH QKEPPFLWMG YELHPDKWTI QPIVLPEKDS WTVndiqklv gklNWASQIY PGIkvrqlck llrgtKALTE VIPLTEeael elaenreILK EPVHGVYYDP Skdliaeiqk qgqgqwtyqi yqePFKNLKT GKYARMRGAH TNdvkqltea vqkittesiv IWGKTPKFKL PIQKEtwetw wteywqaTWI PEWEFVNTPP LvklwyqlEK EPIVGAETFY VDGAASRETK LGKAGYVTNR GRQkvvtlth ttnqktelqa ihlalqDSGL EVNIVTDSqy algiIQAQPD KSEselvnqi ieqlikkekv ylawVPAHKG IGGNEqvdkl vsagirkilf ldgidkaqee hekyhsnwra MASDFNLPPV vakeivascd kCQLKGEAMH GQVDCSPGIW QLDCTHLegk vilvavhvas GYIEAEVIPA ETGQetayfl lklAGRWPVK TIHTDNGSNF Tsatvkaacw waGIKQEFGI PYNPQSQGvv esmnkelkki igqvrdqaeh lktavqmavf ihnFKRKGGI GGYSAgeriv diiatdiqtk elqkqitkiq nfrvyYRDSR NPLWKGPAKL LWKGEGAVVI QDNSDIKVVP Rrkakiirdy GKQMAGDDCV ASRQDED
>P04587_HOTLOOPS
1-32, 121-129, 280-292, 398-411, 446-495, 534-547, 606-627, 642-671, 677-705, 731-740, 813-823, 863-871, 886-898, 977-993, 1040-1063, 1272-1281, 1403-1422, 1428-1447
MGARASVLSG GELDRWEKIR LRPGGKKKYK LKhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tvatlycvhq rieikdtkea ldkieeeqnk skkkaqqaaa DTGHSSQVSq nypivqniqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrvhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspT SILDIRQGPK EPfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tnsttimmqr gnfrnqrkiv kcfncgkEGH IARNCKAPRK Kgcwkcgkeg hqmkdcterq anflredlaf lqgkaREFSS EQTRANSPTI SSEQTRANSP TRRELQVWGR DNNSPSEAGA DRQGTvsfnf pqitlwqrpl vtikiggqlk ealldtgadd tvlEEMSLPG RWKPKMIggi ggfikvrqyd qilieicghk aigtvlvgpt pvniigrnll tqigctlnfp ispieTVPVK LKPGMDGPKV KQWPLTEeki kalveictem eKEGKISKIG PENPYNTPVF AIKKKDSTKW RklvdfRELN RRTQDFWEVQ LGIPHPAGLK KKKSVtvldv gdayfsvpld edfrkytaft IPSINNETPG sgyqynvlpq gwkgspaifq ssmtkilepf rkqnpdiviy qymddlyvgs dleigqhrtk ieelrqhllr wgFTTPDKKH QKEppflwmg yelhpdkwti qpivlpekds wtvndiqklv gkLNWASQIY Pgikvrqlck llrgtKALTE VIPLTEEAel elaenreilk epvhgvyydp skdliaeiqk qgqgqwtyqi yqepfknlkt gkyarmrgah tndvkqltea vqkittESIV IWGKTPKFKL PIQketwetw wteywqatwi pewefvntpp lvklwyqlek epivgaetfY VDGAASRETK LGKAGYVTNR GRQkvvtlth ttnqktelqa ihlalqdsgl evnivtdsqy algiiqaqpd kseselvnqi ieqlikkekv ylawvpahkg iggneqvdkl vsagirkilf ldgidkaqee hekyhsnwra masdfnlppv vakeivascd kcqlkgeamh gqvdcspgiw qldcthlegk vilvavhvas gyieaevipa etgqetayfl lklagrwpvk tIHTDNGSNF Tsatvkaacw wagikqefgi pynpqsqgvv esmnkelkki igqvrdqaeh lktavqmavf ihnfkrkggi ggysageriv diiatdiqtk elqkqitkiq nfrvyyrdsr nplwkgpakl lwKGEGAVVI QDNSDIKVVP RRkakiiRDY GKQMAGDDCV ASRQDED
>P04587_REM465
1-9, 106-128, 447-491, 1370-1378, 1414-1447
MGARASVLSg geldrwekir lrpggkkkyk lkhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tvatlycvhq rieikdtkea ldkieEEQNK SKKKAQQAAA DTGHSSQVsq nypivqniqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrvhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspt sildirqgpk epfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tnsttimmqr gnfrnqrkiv kcfncgkegh iarnckaprk kgcwkcgkeg hqmkdcterq anflredlaf lqgkarEFSS EQTRANSPTI SSEQTRANSP TRRELQVWGR DNNSPSEAGA Drqgtvsfnf pqitlwqrpl vtikiggqlk ealldtgadd tvleemslpg rwkpkmiggi ggfikvrqyd qilieicghk aigtvlvgpt pvniigrnll tqigctlnfp ispietvpvk lkpgmdgpkv kqwplteeki kalveictem ekegkiskig penpyntpvf aikkkdstkw rklvdfreln rrtqdfwevq lgiphpaglk kkksvtvldv gdayfsvpld edfrkytaft ipsinnetpg sgyqynvlpq gwkgspaifq ssmtkilepf rkqnpdiviy qymddlyvgs dleigqhrtk ieelrqhllr wgfttpdkkh qkeppflwmg yelhpdkwti qpivlpekds wtvndiqklv gklnwasqiy pgikvrqlck llrgtkalte viplteeael elaenreilk epvhgvyydp skdliaeiqk qgqgqwtyqi yqepfknlkt gkyarmrgah tndvkqltea vqkittesiv iwgktpkfkl piqketwetw wteywqatwi pewefvntpp lvklwyqlek epivgaetfy vdgaasretk lgkagyvtnr grqkvvtlth ttnqktelqa ihlalqdsgl evnivtdsqy algiiqaqpd kseselvnqi ieqlikkekv ylawvpahkg iggneqvdkl vsagirkilf ldgidkaqee hekyhsnwra masdfnlppv vakeivascd kcqlkgeamh gqvdcspgiw qldcthlegk vilvavhvas gyieaevipa etgqetayfl lklagrwpvk tihtdngsnf tsatvkaacw wagikqefgi pynpqsqgvv esmnkelkki igqvrdqaeh lktavqmavf ihnfkrkggi ggysageriv diiatdiqtK ELQKQITKiq nfrvyyrdsr nplwkgpakl lwkgegavvi qdnSDIKVVP RRKAKIIRDY GKQMAGDDCV ASRQDED
| JOB-ID | P04587_111308Zt7YRH8AAQEAABReAFoAAAAE |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P04587 |
| Description | sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate BH5) OX=11682 GN=gag-pol PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 1447 |
| Download predictions | smoothed scores raw scores |