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>P05959_LOOPS
1-30, 42-52, 120-149, 162-183, 211-239, 249-260, 275-294, 349-357, 380-502, 513-540, 558-574, 581-615, 631-661, 677-747, 756-765, 774-785, 800-842, 897-910, 933-951, 970-983, 997-1010, 1019-1061, 1076-1087, 1094-1102, 1123-1134, 1170-1179, 1191-1216, 1230-1243, 1254-1271, 1282-1297, 1333-1344, 1373-1383, 1392-1410, 1420-1436
MGARASVLSG GKLDKWEKIR LRPRGKKRYK lkhivwasre lERFAVNPSL LEtaegcrqi lgqlqpalqt gseelkslyn avatlycvhq nievrdtkea ldkieeeqnk skkkaqqaaA DTGNGSQVSQ NYPIVQNLQG QMVHQAISPr tlnawvkvve eKAFSPEVIP MFSALSEGAT PQDlntmlnt vgghqaamqm lketineeaa EWDRLHPVHA GPIAPGQMRE PRGSDIAGTt stlqeqigWM TNNPPIPVGE iykrwiilgl nkivRMYSPI SILDIRQGPK EPFRdyvdrf yktlraeqas qdvknwmtet flvqnanpdc ktilkalgpa atleemmtAC QGVGGPShka rilaeamsqv tnsatimlqK GNFRDQRKIV KCFNCGKVGH IAKNCRAPRK KGCWKCGKEG HQMKDCTNEG RQANFLRENL AFPQGKAREL SSEQTRANSP TRRELQVWGR DNSLSEAGED RQGTVSFSFP QITLWQRPIV TVkiggqlke alLDTGADDT VLEEMNLPGK WKPKMIGGIG gfikvrqydq ilieicgHKA IGTVLVGPTP VNIIgrnllt QIGCTLNFPI SPIETVPVKL KPGMDGPKVK QWPLTeekik alveicteme KEGKISKIGP ENPYNTPVFA IKKKDSTKWR Klvdfrelnk rtqdfwEVQL GIPHPAGLKK KKSVTVLDVG DAYFSVPLDK EFRKYTAFTI PSINNETPRI RYQYNVLPQG WKGSPAIfqs smtkiLEPFK KQNPEiviyq ymdDLYVGSD LEIGQhriki eelrehllkW GFTTPDKKHQ KEPPFLWMGY ELHPDKWTVQ PIVLPEKDSW TVndiqklvg klnwasqiya gikvkqlckl lrgtkaltev vqltkeaele laenreILKE PVHGVYYDPS kdliaeiqkq gqgqwtyqiy qePFKNLKTG KYARMRGAHT Ndvkqlteav qkvatesivI WGKTPKFKLP IQKetweaww teywqaTWIP EWEFVNTPPL vklwyqleKE PIIGAETFYV DGAANRETKL GKAGYVTDRG RQKVVSLTDT Tnqktelqai hlalqDSGLE VNIVTDSqya lgiIQAQPDK SEselvsqii eqlikkekvy laWVPAHKGI GGNEqvdrlv stgirkvlfl dgidkaqdeh ekyhsnwraM ASDFNLPPVv akeivascdk CQLKGEAMHG QVDCSPGIWQ LDCTHLegki ilvavhvasG YIEAEVIPAE TGQetayfil klaGRWPVKV IHTDNGSNFT Sttvkaacww aGIKQEFGIP YNPQSQGvve smnkqlkqii gqvrdqaehl ktavqmavfi hnFKRKGGIG GYSAgerivd iiatdiqtke lqkqitkiqn frVYYRDSRD PLWkghakll wKGEGAVVIQ DNSDIKVVPR rkakiirdyG KQMAGDDCVA SRQDED
>P05959_HOTLOOPS
1-44, 120-128, 281-292, 393-411, 442-496, 525-536, 595-616, 631-660, 670-696, 703-713, 718-729, 802-812, 890-902, 966-981, 1035-1052, 1127-1137, 1262-1270, 1392-1411, 1417-1436
MGARASVLSG GKLDKWEKIR LRPRGKKRYK LKHIVWASRE LERFavnpsl letaegcrqi lgqlqpalqt gseelkslyn avatlycvhq nievrdtkea ldkieeeqnk skkkaqqaaA DTGNGSQVsq nypivqnlqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrlhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspi SILDIRQGPK EPfrdyvdrf yktlraeqas qdvknwmtet flvqnanpdc ktilkalgpa atleemmtac qgvggpshka rilaeamsqv tnsatimlqk gnfrdqrkiv kcFNCGKVGH IAKNCRAPRK Kgcwkcgkeg hqmkdctneg rqanflrenl aFPQGKAREL SSEQTRANSP TRRELQVWGR DNSLSEAGED RQGTVSFSFP QITLWQrpiv tvkiggqlke alldtgaddt vleeMNLPGK WKPKMIggig gfikvrqydq ilieicghka igtvlvgptp vniigrnllt qigctlnfpi spieTVPVKL KPGMDGPKVK QWPLTEekik alveicteme KEGKISKIGP ENPYNTPVFA IKKKDSTKWR klvdfrelnK RTQDFWEVQL GIPHPAGLKK KKSVTVldvg daYFSVPLDK EFRkytaFTI PSINNETPRi ryqynvlpqg wkgspaifqs smtkilepfk kqnpeiviyq ymddlyvgsd leigqhriki eelrehllkw gFTTPDKKHQ KEppflwmgy elhpdkwtvq pivlpekdsw tvndiqklvg klnwasqiya gikvkqlckl lrgtkaltev vqltkeaelE LAENREILKE PVhgvyydps kdliaeiqkq gqgqwtyqiy qepfknlktg kyarmrgaht ndvkqlteav qkvatESIVI WGKTPKFKLP Iqketweaww teywqatwip ewefvntppl vklwyqleke piigaetfyv dgaaNRETKL GKAGYVTDRG RQkvvsltdt tnqktelqai hlalqdsgle vnivtdsqya lgiiqaqpdk seselvsqii eqlikkekvy lawvpaHKGI GGNEQVDrlv stgirkvlfl dgidkaqdeh ekyhsnwram asdfnlppvv akeivascdk cqlkgeamhg qvdcspgiwq ldcthlegki ilvavhvasg yieaevipae tgqetayfil klagrwpvkv iHTDNGSNFT sttvkaacww agikqefgip ynpqsqgvve smnkqlkqii gqvrdqaehl ktavqmavfi hnfkrkggig gysagerivd iiatdiqtke lqkqitkiqn frvyyrdsrd plwkghakll wKGEGAVVIQ DNSDIKVVPR RkakiiRDYG KQMAGDDCVA SRQDED
>P05959_REM465
1-9, 106-126, 445-465, 1098-1106, 1359-1368, 1403-1436
MGARASVLSg gkldkwekir lrprgkkryk lkhivwasre lerfavnpsl letaegcrqi lgqlqpalqt gseelkslyn avatlycvhq nievrdtkea ldkieEEQNK SKKKAQQAAA DTGNGSqvsq nypivqnlqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrlhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspi sildirqgpk epfrdyvdrf yktlraeqas qdvknwmtet flvqnanpdc ktilkalgpa atleemmtac qgvggpshka rilaeamsqv tnsatimlqk gnfrdqrkiv kcfncgkvgh iakncraprk kgcwkcgkeg hqmkdctneg rqanflrenl afpqGKAREL SSEQTRANSP TRRELqvwgr dnslseaged rqgtvsfsfp qitlwqrpiv tvkiggqlke alldtgaddt vleemnlpgk wkpkmiggig gfikvrqydq ilieicghka igtvlvgptp vniigrnllt qigctlnfpi spietvpvkl kpgmdgpkvk qwplteekik alveicteme kegkiskigp enpyntpvfa ikkkdstkwr klvdfrelnk rtqdfwevql giphpaglkk kksvtvldvg dayfsvpldk efrkytafti psinnetpri ryqynvlpqg wkgspaifqs smtkilepfk kqnpeiviyq ymddlyvgsd leigqhriki eelrehllkw gfttpdkkhq keppflwmgy elhpdkwtvq pivlpekdsw tvndiqklvg klnwasqiya gikvkqlckl lrgtkaltev vqltkeaele laenreilke pvhgvyydps kdliaeiqkq gqgqwtyqiy qepfknlktg kyarmrgaht ndvkqlteav qkvatesivi wgktpkfklp iqketweaww teywqatwip ewefvntppl vklwyqleke piigaetfyv dgaanretkl gkagyvtdrg rqkvvsltdt tnqktelqai hlalqdsgle vnivtdsqya lgiiqaqPDK SESELVsqii eqlikkekvy lawvpahkgi ggneqvdrlv stgirkvlfl dgidkaqdeh ekyhsnwram asdfnlppvv akeivascdk cqlkgeamhg qvdcspgiwq ldcthlegki ilvavhvasg yieaevipae tgqetayfil klagrwpvkv ihtdngsnft sttvkaacww agikqefgip ynpqsqgvve smnkqlkqii gqvrdqaehl ktavqmavfi hnfkrkggig gysagerivd iiatdiqtKE LQKQITKIqn frvyyrdsrd plwkghakll wkgegavviq dnSDIKVVPR RKAKIIRDYG KQMAGDDCVA SRQDED
| JOB-ID | P05959_043036Zzgf7H8AAQEAAGkXNq8AAABA |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P05959 |
| Description | sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) OX=11701 GN=gag-pol PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 1436 |
| Download predictions | smoothed scores raw scores |