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>P06441_LOOPS
43-81, 135-203, 213-223, 231-250, 275-339, 356-440, 454-463, 476-516, 522-575, 580-618, 628-635, 640-666, 679-694, 706-716, 726-762, 772-797, 818-835, 893-904, 915-930, 937-948, 1120-1129, 1181-1195, 1227-1238, 1250-1274, 1282-1307, 1312-1337, 1349-1366, 1422-1430, 1437-1449, 1480-1520, 1533-1541, 1551-1568, 1580-1590, 1605-1618, 1641-1657, 1663-1674, 1679-1698, 1752-1786, 1792-1807, 1831-1881, 1889-1911, 1919-1928, 1936-1962, 1975-1993, 2003-2014, 2029-2044, 2114-2134, 2143-2151
mnmskqgifq tvgsgldhil sladieeeqm iqsvdrtavt gaSYFTSVDQ SSVHTAEVGS HQIEPLKTSV DKPGSKKTQG Ekfflihsad wltthalfhe vakldvvkll yneqfavqgl lryhtyarfg ieiqVQINPT PFQQGGLICA MVPGDQSYGS IASLTVYPHG LLNCNINNVV RIKVPFIYTR GAYHFKDPQY PVWeltirvw seLNIGTGTS AYTslnvlar FTDLELHGLT PLSTQMMRNE frvsttenvv nlsnyedara kmsfALDQED WKSDPSQGGG IKITHFTTWT SIPTLAAQFP FNASDSVGQQ IKVIPVDPYF FQMTNTNPDq kcitalasic qmfcfWRGDL VFDFQVFPTK YHSGRLLFCF VPGNELIDVT GITLKQATTA PCAVMDITGV QSTLRFRVPW ISDTPYRVNR YTKSAHQKGE ytaigklivy cynRLTSPSN VAShvrvnvy lsainLECFA PLYHAMDVTT QVGDDSGGFS TTVSTEQNVP DPQVGIttmr dLKGKANRGK MDVSGVQAPR GSYQQQLNDP VLAKKVPETF PELKPGESRH TSDHMsiykF MGRSHFLCTF TFNSNNKEYT FPITLSSTSN PPHGLPSTlr wffnlfqLYR GPLDLtiiiT GATDVDGMAW FTPVGLAVDP WVEKESalsi dyktalgaVR FNTRRTGNIQ IRLPwysyly avsgaLDGLG DKTDSTfglf lfeiaNYNHS DEYLSFSCYL SVTEQSEFYF PRAPLNSNAM LStesmmsri aAGDLESSVD DPRSEEDRRF ESHIECRkpy kelrlevgkq rlkyaqeELS NEVLPPPRKM KGLFSqakis lfyteeheim kfswrgvtad tralrrfgfs laagrsvwtl emdagvltgr liRLNDEKWT EMKDdkivsl iekfTSNKYW SKVNFPHGML dleeiaANSK DFPNMSETdl cfllhwlnpk kinladrmlg lsgvqeikeq gvgliaecrt fldsiagtlk smmfgfhhsv tveiintvlc fvksgillyv iqqlnqdehs hiigllrvmn yadigcsvis cgkvfskmle tvfnwqmdsr mmelrtqsfs nwlrdicsgi tifksfkdai ywlytklkdF YEVNYGKKKd ilnilkdnqq kiekaieead nfcilqiqdv ekfdqyqkgv dliqklrtvh SMAQVDPNLG VHLSPlrdci arvhqklknl gsinqamvtr cepvvcYLYG KRGGGKSLts ialatkickH YGVEPEKNIY TKPVASDYWD GYSGqlvcii dDIGQNTTDE DWSDFCQLVS GCPMRLNmas lEEKGRHFSS PFIIATSNWS NPSPKTVyvk eaidrrlhFK VEVKPASFFK NPHNDMlnvn laktndaikd mscvdlimdg hnislmdlls slvmtveirk qnmsefmelw sQGISDDDND savaefFQSF PSGEPSNWKl ssffqsvtnh kwvavgaavg ilgvlvggwF VYKHFSRKEE EPIPAEGVYH GVTKPKQVIK LDADPVESQS tleiaglvrk nlVQFGVGEK Ngcvrwvmna LGVKDDWLLV PSHAYKFEkd yemmefyfnR GGTYYSISAG nvviqsldvg fqdvVLMKVP TIPKFRDItq hfikkgdvpr alnrlatlvt TVNGTPMLIS EGPLKMEeka tyVHKKNDGT TVDLtvdqAW RGKGEGLPGM CGGALVSSnq siqnailgih vaggnsilva klvtqemfqn idkkiesqri mkveftqcsm nVVSKTLFRK SPIHHHIDKT MINFPAAMPF SKAEIDpmam mLSKYSLPIV EEPEDYKeas vfyqnkivgk tqlvddfldl DMAITGAPGI DAINMDSSPG FPYVQEKLTK RDLIWLDENG LLLGVHPRLA QrilfntvMM ENCSDLDVVF TTCPKDELRP LekvleskTR AIDACPLDyt ilcrmYWGPA ISYFHLNPGF HTGVAIGIDP DRqwdelfkt mirfGDVGLD LDFSAFDASL SPFmireagr imSELSGTPS HFGTalinti iyskhllyNC CYHVCGSMPS GSPCtallns iinninlyyv fskifgkspv ffcqalrilc ygddvlivfs rdvqidnldl igqkivdefk klgMTATSAD KNVPQLKPVS ELTFlkrsfn lvEDRIRPAI Sektiwslma wqrsnaefeq nlenaqwfaf mhgyefyqkf yyfvqsclek emieyrlksy dwwrmrfydq cficdls
>P06441_HOTLOOPS
55-76, 409-442, 503-516, 538-551, 560-572, 674-693, 774-803, 817-830, 869-905, 914-923, 1210-1219, 1252-1261, 1324-1335, 1356-1366, 1490-1502, 1551-1560, 1622-1631, 1638-1654, 1662-1673, 1910-1927, 2115-2150
mnmskqgifq tvgsgldhil sladieeeqm iqsvdrtavt gasyftsvdq ssvhTAEVGS HQIEPLKTSV DKPGSKktqg ekfflihsad wltthalfhe vakldvvkll yneqfavqgl lryhtyarfg ieiqvqinpt pfqqgglica mvpgdqsygs iasltvyphg llncninnvv rikvpfiytr gayhfkdpqy pvweltirvw selnigtgts aytslnvlar ftdlelhglt plstqmmrne frvsttenvv nlsnyedara kmsfaldqed wksdpsqggg ikithfttwt siptlaaqfp fnasdsvgqq ikvipvdpyf fqmtntnpdq kcitalasic qmfcfwrgdl vfdfqvfptk yhsgrllfcf vpgnelidvt gitlkqatta pcavmditGV QSTLRFRVPW ISDTPYRVNR YTKSAHQKGE YTaigklivy cynrltspsn vashvrvnvy lsainlecfa plyhamdvtt qvgddsggfs ttVSTEQNVP DPQVGIttmr dlkgkanrgk mdvsgvqAPR GSYQQQLNDP VlakkvpetF PELKPGESRH TSdhmsiykf mgrshflctf tfnsnnkeyt fpitlsstsn pphglpstlr wffnlfqlyr gpldltiiit gatdvdgmaw ftpvglavdp wvekesalsi dykTALGAVR FNTRRTGNIQ IRLpwysyly avsgaldglg dktdstfglf lfeianynhs deylsfscyl svteqsefyf praplnsnam lstesmmsri aagDLESSVD DPRSEEDRRF ESHIECRKPY KELrlevgkq rlkyaqEELS NEVLPPPRKM kglfsqakis lfyteeheim kfswrgvtad tralrrfgFS LAAGRSVWTL EMDAGVLTGR LIRLNDEKWT EMKDDkivsl iekFTSNKYW SKVnfphgml dleeiaansk dfpnmsetdl cfllhwlnpk kinladrmlg lsgvqeikeq gvgliaecrt fldsiagtlk smmfgfhhsv tveiintvlc fvksgillyv iqqlnqdehs hiigllrvmn yadigcsvis cgkvfskmle tvfnwqmdsr mmelrtqsfs nwlrdicsgi tifksfkdai ywlytklkdf yevnygkkkd ilnilkdnqq kiekaieead nfcilqiqdv ekfdqyqkgv dliqklrtvh smaqvdpnlg vhlsplrdci arvhqklknL GSINQAMVTr cepvvcylyg krgggkslts ialatkickh yGVEPEKNIY Tkpvasdywd gysgqlvcii ddigqnttde dwsdfcqlvs gcpmrlnmas leekgrhfss pfiIATSNWS NPSPKtvyvk eaidrrlhfk vevkpASFFK NPHNDMlnvn laktndaikd mscvdlimdg hnislmdlls slvmtveirk qnmsefmelw sqgisdddnd savaeffqsf psgepsnwkl ssffqsvtnh kwvavgaavg ilgvlvggwf vykhfsrkeE EPIPAEGVYH GVtkpkqvik ldadpvesqs tleiaglvrk nlvqfgvgek ngcvrwvmna LGVKDDWLLV pshaykfekd yemmefyfnr ggtyysisag nvviqsldvg fqdvvlmkvp tipkfrditq hFIKKGDVPR AlnrlatLVT TVNGTPMLIS EGPLkmeeka tYVHKKNDGT TVDltvdqaw rgkgeglpgm cggalvssnq siqnailgih vaggnsilva klvtqemfqn idkkiesqri mkveftqcsm nvvsktlfrk spihhhidkt minfpaampf skaeidpmam mlskyslpiv eepedykeas vfyqnkivgk tqlvddfldl dmaitgapgi dainmdsspg fpyvqekltk rdliwldeng lllgvhprla qrilfntvmm encsdldvvf ttcpkdelrP LEKVLESKTR AIDACPLdyt ilcrmywgpa isyfhlnpgf htgvaigidp drqwdelfkt mirfgdvgld ldfsafdasl spfmireagr imselsgtps hfgtalinti iyskhllync cyhvcgsmps gspctallns iinninlyyv fskifgkspv ffcqalrilc ygddvlivfs rdvqidnldl igqkivdefk klgmTATSAD KNVPQLKPVS ELTFLKRSFN LVEDRIRPAI sektiwslma wqrsnaefeq nlenaqwfaf mhgyefyqkf yyfvqsclek emieyrlksy dwwrmrfydq cficdls
>P06441_REM465
775-791
mnmskqgifq tvgsgldhil sladieeeqm iqsvdrtavt gasyftsvdq ssvhtaevgs hqieplktsv dkpgskktqg ekfflihsad wltthalfhe vakldvvkll yneqfavqgl lryhtyarfg ieiqvqinpt pfqqgglica mvpgdqsygs iasltvyphg llncninnvv rikvpfiytr gayhfkdpqy pvweltirvw selnigtgts aytslnvlar ftdlelhglt plstqmmrne frvsttenvv nlsnyedara kmsfaldqed wksdpsqggg ikithfttwt siptlaaqfp fnasdsvgqq ikvipvdpyf fqmtntnpdq kcitalasic qmfcfwrgdl vfdfqvfptk yhsgrllfcf vpgnelidvt gitlkqatta pcavmditgv qstlrfrvpw isdtpyrvnr ytksahqkge ytaigklivy cynrltspsn vashvrvnvy lsainlecfa plyhamdvtt qvgddsggfs ttvsteqnvp dpqvgittmr dlkgkanrgk mdvsgvqapr gsyqqqlndp vlakkvpetf pelkpgesrh tsdhmsiykf mgrshflctf tfnsnnkeyt fpitlsstsn pphglpstlr wffnlfqlyr gpldltiiit gatdvdgmaw ftpvglavdp wvekesalsi dyktalgavr fntrrtgniq irlpwysyly avsgaldglg dktdstfglf lfeianynhs deylsfscyl svteqsefyf praplnsnam lstesmmsri aagdLESSVD DPRSEEDRRF Eshiecrkpy kelrlevgkq rlkyaqeels nevlppprkm kglfsqakis lfyteeheim kfswrgvtad tralrrfgfs laagrsvwtl emdagvltgr lirlndekwt emkddkivsl iekftsnkyw skvnfphgml dleeiaansk dfpnmsetdl cfllhwlnpk kinladrmlg lsgvqeikeq gvgliaecrt fldsiagtlk smmfgfhhsv tveiintvlc fvksgillyv iqqlnqdehs hiigllrvmn yadigcsvis cgkvfskmle tvfnwqmdsr mmelrtqsfs nwlrdicsgi tifksfkdai ywlytklkdf yevnygkkkd ilnilkdnqq kiekaieead nfcilqiqdv ekfdqyqkgv dliqklrtvh smaqvdpnlg vhlsplrdci arvhqklknl gsinqamvtr cepvvcylyg krgggkslts ialatkickh ygvepekniy tkpvasdywd gysgqlvcii ddigqnttde dwsdfcqlvs gcpmrlnmas leekgrhfss pfiiatsnws npspktvyvk eaidrrlhfk vevkpasffk nphndmlnvn laktndaikd mscvdlimdg hnislmdlls slvmtveirk qnmsefmelw sqgisdddnd savaeffqsf psgepsnwkl ssffqsvtnh kwvavgaavg ilgvlvggwf vykhfsrkee epipaegvyh gvtkpkqvik ldadpvesqs tleiaglvrk nlvqfgvgek ngcvrwvmna lgvkddwllv pshaykfekd yemmefyfnr ggtyysisag nvviqsldvg fqdvvlmkvp tipkfrditq hfikkgdvpr alnrlatlvt tvngtpmlis egplkmeeka tyvhkkndgt tvdltvdqaw rgkgeglpgm cggalvssnq siqnailgih vaggnsilva klvtqemfqn idkkiesqri mkveftqcsm nvvsktlfrk spihhhidkt minfpaampf skaeidpmam mlskyslpiv eepedykeas vfyqnkivgk tqlvddfldl dmaitgapgi dainmdsspg fpyvqekltk rdliwldeng lllgvhprla qrilfntvmm encsdldvvf ttcpkdelrp lekvlesktr aidacpldyt ilcrmywgpa isyfhlnpgf htgvaigidp drqwdelfkt mirfgdvgld ldfsafdasl spfmireagr imselsgtps hfgtalinti iyskhllync cyhvcgsmps gspctallns iinninlyyv fskifgkspv ffcqalrilc ygddvlivfs rdvqidnldl igqkivdefk klgmtatsad knvpqlkpvs eltflkrsfn lvedrirpai sektiwslma wqrsnaefeq nlenaqwfaf mhgyefyqkf yyfvqsclek emieyrlksy dwwrmrfydq cficdls
| JOB-ID | P06441_144018Zt8I0n8AAQEAABRfISwAAABI |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P06441 |
| Description | sp|P06441|POLG_HAVLA Genome polyprotein OS=Human hepatitis A virus genotype IA (isolate LA) OX=12099 PE=3 SV=1 |
| Title/ID | none |
| Sequence length | 2227 |
| Download predictions | smoothed scores raw scores |