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>P0C6F2_LOOPS
1-30, 43-54, 64-74, 119-149, 162-183, 210-239, 249-260, 275-294, 349-358, 390-425, 446-501, 512-539, 557-573, 580-614, 630-660, 676-746, 755-765, 773-783, 800-841, 852-861, 874-884, 896-909, 932-951, 969-983, 996-1009, 1017-1062, 1075-1086, 1093-1101, 1123-1133, 1169-1178, 1190-1215, 1229-1242, 1252-1269, 1281-1296, 1332-1343, 1374-1409, 1419-1435
MGARASVLSG GKLDRWEKIR LRPGGKKKYK lkhivwasre leRFAVNPGL LETSegcrqi lgqLQPSLQT GSEEcrslyn tvatlycvhq rieikdtkea ldkikeeqnk skkkaqqaAA DTGHSSQVSQ NYPIVQNIQG QMVHQAISPr tlnawvkvve eKAFSPEVIP MFSALSEGAT PQDlntmlnt vgghqaamqm lketineeaA EWDRVHPVHA GPIAPGQMRE PRGSDIAGTt stlqeqigWM TNNPPIPVGE iykrwiilgl nkivRMYSPT SILDIRQGPK EPFRdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtAC QGVGGPGHka rvlaeamsqv tnsatimmqr gnfrnqrkiV KCFNCGKEGH IARNCRAPRK KGCWKCGKEG HQMKDcterq anffredlaf lqgkaREFSS EQTRANSPTR RELQVWGRDN NSPSEAGADR QGTVSFNFPQ ITLWQRPLVT Ikiggqlkea lLDTGADDTV LEEMSLPGRW KPKMIGGIGg fikvrqydqi lieicgHKAI GTVLVGPTPV NIIgrnlltQ IGCTLNFPIS PIETVPVKLK PGMDGPKVKQ WPLTeekika lveictemeK EGKISKIGPE NPYNTPVFAI KKKDSTKWRK lvdfrelnkr tqdfwEVQLG IPHPAGLKKK KSVTVLDVGD AYFSVPLDED FRKYTAFTIP SINNETPGIR YQYNVLPQGW KGSPAIfqss mtkiLEPFRK QNPDIviyqy mdDLYVGSDL EIGqhrtkie elrqhllrwG LTTPDKKHQK EPPFLWMGYE LHPDKWTVQP IVLPEKDSWT Vndiqklvgk lNWASQIYPG Ikvrqlckll rgtKALTEVI PLTEeaelel aenreILKEP VHGVYYDPSk dliaeiqkqg qgqwtyqiyq ePFKNLKTGK YARMRGTHTN Dvkqlteavq kittesivIW GKTPKFKLPI QKEtwetwwt eywqaTWIPE WEFVNTPPLv klwyqlEKEP IVGAETFYVD GAANRETKLG KAGYVTNKGR QKVVPLTNTT NQktelqaiy lalqDSGLEV NIVTDSqyal giIQAQPDKS Eselvnqiie qlikkekvyl awVPAHKGIG GNEqvdklvs agirkilfld gidkaqdehe kyhsnwraMA SDFNLPPVva keivascdkC QLKGEAMHGQ VDCSPGIWQL DCTHLegkvi lvavhvasGY IEAEVIPAET GQetayfllk lAGRWPVKTI HTDNGSNFTs atvkaacwwa GIKQEFGIPY NPQSQGvves mnkelkkiig qvrdqaehlk tavqmavfih nFKRKGGIGG YSAgerivdi iatdiqtkel qkqitkiqnf rvyYRDSRNP LWKGPAKLLW KGEGAVVIQD NSDIKVVPRr kakiirdyGK QMAGDDCVAS RQDED
>P0C6F2_HOTLOOPS
1-32, 120-129, 280-292, 398-411, 446-470, 522-535, 594-615, 630-659, 669-693, 718-728, 800-811, 851-859, 874-886, 964-981, 1034-1063, 1260-1269, 1391-1410, 1416-1435
MGARASVLSG GKLDRWEKIR LRPGGKKKYK LKhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseecrslyn tvatlycvhq rieikdtkea ldkikeeqnk skkkaqqaaA DTGHSSQVSq nypivqniqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrvhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspT SILDIRQGPK EPfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tnsatimmqr gnfrnqrkiv kcfncgkEGH IARNCRAPRK Kgcwkcgkeg hqmkdcterq anffredlaf lqgkaREFSS EQTRANSPTR RELQVWGRDN nspseagadr qgtvsfnfpq itlwqrplvt ikiggqlkea lldtgaddtv lEEMSLPGRW KPKMIggigg fikvrqydqi lieicghkai gtvlvgptpv niigrnlltq igctlnfpis pieTVPVKLK PGMDGPKVKQ WPLTEekika lveictemeK EGKISKIGPE NPYNTPVFAI KKKDSTKWRk lvdfrelnKR TQDFWEVQLG IPHPAGLKKK KSVtvldvgd ayfsvplded frkytafTIP SINNETPGir yqynvlpqgw kgspaifqss mtkilepfrk qnpdiviyqy mddlyvgsdl eigqhrtkie elrqhllrwG LTTPDKKHQK Eppflwmgye lhpdkwtvqp ivlpekdswt vndiqklvgk LNWASQIYPg ikvrqlckll rgtKALTEVI PLTEEAelel aenreilkep vhgvyydpsk dliaeiqkqg qgqwtyqiyq epfknlktgk yarmrgthtn dvkqlteavq kitTESIVIW GKTPKFKLPI Qketwetwwt eywqatwipe wefvntpplv klwyqlekep ivgaetfyvd gaaNRETKLG KAGYVTNKGR QKVVPLTNTT NQKtelqaiy lalqdsglev nivtdsqyal giiqaqpdks eselvnqiie qlikkekvyl awvpahkgig gneqvdklvs agirkilfld gidkaqdehe kyhsnwrama sdfnlppvva keivascdkc qlkgeamhgq vdcspgiwql dcthlegkvi lvavhvasgy ieaevipaet gqetayfllk lagrwpvktI HTDNGSNFTs atvkaacwwa gikqefgipy npqsqgvves mnkelkkiig qvrdqaehlk tavqmavfih nfkrkggigg ysagerivdi iatdiqtkel qkqitkiqnf rvyyrdsrnp lwkgpakllw KGEGAVVIQD NSDIKVVPRR kakiiRDYGK QMAGDDCVAS RQDED
>P0C6F2_REM465
1-9, 107-128, 447-479, 1358-1366, 1402-1435
MGARASVLSg gkldrwekir lrpggkkkyk lkhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseecrslyn tvatlycvhq rieikdtkea ldkikeEQNK SKKKAQQAAA DTGHSSQVsq nypivqniqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrvhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspt sildirqgpk epfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tnsatimmqr gnfrnqrkiv kcfncgkegh iarncraprk kgcwkcgkeg hqmkdcterq anffredlaf lqgkarEFSS EQTRANSPTR RELQVWGRDN NSPSEAGADr qgtvsfnfpq itlwqrplvt ikiggqlkea lldtgaddtv leemslpgrw kpkmiggigg fikvrqydqi lieicghkai gtvlvgptpv niigrnlltq igctlnfpis pietvpvklk pgmdgpkvkq wplteekika lveictemek egkiskigpe npyntpvfai kkkdstkwrk lvdfrelnkr tqdfwevqlg iphpaglkkk ksvtvldvgd ayfsvplded frkytaftip sinnetpgir yqynvlpqgw kgspaifqss mtkilepfrk qnpdiviyqy mddlyvgsdl eigqhrtkie elrqhllrwg lttpdkkhqk eppflwmgye lhpdkwtvqp ivlpekdswt vndiqklvgk lnwasqiypg ikvrqlckll rgtkaltevi plteeaelel aenreilkep vhgvyydpsk dliaeiqkqg qgqwtyqiyq epfknlktgk yarmrgthtn dvkqlteavq kittesiviw gktpkfklpi qketwetwwt eywqatwipe wefvntpplv klwyqlekep ivgaetfyvd gaanretklg kagyvtnkgr qkvvpltntt nqktelqaiy lalqdsglev nivtdsqyal giiqaqpdks eselvnqiie qlikkekvyl awvpahkgig gneqvdklvs agirkilfld gidkaqdehe kyhsnwrama sdfnlppvva keivascdkc qlkgeamhgq vdcspgiwql dcthlegkvi lvavhvasgy ieaevipaet gqetayfllk lagrwpvkti htdngsnfts atvkaacwwa gikqefgipy npqsqgvves mnkelkkiig qvrdqaehlk tavqmavfih nfkrkggigg ysagerivdi iatdiqtKEL QKQITKiqnf rvyyrdsrnp lwkgpakllw kgegavviqd nSDIKVVPRR KAKIIRDYGK QMAGDDCVAS RQDED
| JOB-ID | P0C6F2_111714Zt7ZOn8AAQEAABReAG4AAAAY |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P0C6F2 |
| Description | sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate LW123) OX=82834 GN=gag-pol PE=1 SV=1 |
| Title/ID | none |
| Sequence length | 1435 |
| Download predictions | smoothed scores raw scores |