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>P12499_LOOPS
1-29, 44-56, 121-150, 163-184, 212-241, 251-261, 278-295, 350-359, 382-426, 437-502, 513-540, 558-574, 581-615, 630-661, 677-748, 757-765, 774-784, 800-842, 853-862, 875-885, 897-910, 933-951, 970-983, 997-1010, 1019-1062, 1075-1087, 1094-1102, 1124-1134, 1170-1179, 1191-1216, 1230-1243, 1253-1269, 1282-1297, 1333-1344, 1373-1411, 1420-1436
MGARASVLSG GKLDAWEKIR LRPGGKKKYr lkhlvwasre lerFALNPGL LETSDGckqi igqlqpairt gseelrslfn tvatlycvhe rievkdtkea lekmeeeqnk sknkkaqqaa ADAGNNSQVS QNYPIVQNLQ GQMVHQAISP rtlnawvkvi eeKAFSPEVI PMFSALSEGA TPQDlntmln tvgghqaamq mlketineea aEWDRLHPVH AGPIAPGQMR EPRGSDIAGT Tstlqeqiaw MTSNPPIPVG Eiykrwiilg lnkivrmYSP VSILDIRQGP KEPFRdyvdr fyktlraeqa sqevkgwmte tllvqnanpd cktilkalgp qatleemmtA CQGVGGPSHk arvlaeamsq atnsaaavmm qRGNFKGPRK TIKCFNCGKE GHIAKNCRAP RRKGCWKCGK EGHQLKdcte rqanflREDL AFPQGKAGEL SSEQTRANSP TSRELRVWGR DNPLSETGAE RQGTVSFNCP QITLWQRPLV TIkiggqlke alLDTGADDT VLEEMNLPGK WKPKMIGGIG gfikvrqydq ilieicgHKA IGTVLVGPTP VNIIgrnllt QIGCTLNFPI SPIETVPVKL KPGMDGPKVK QWPLTeekik alteictemE KEGKISRVGP ENPYNTPIFA IKKKDSTKWR Klvdfrelnk rtqdfwEVQL GIPHPAGLKK KKSVTVLDVG DAYFSVPLDK DFRKYTAFTI PSINNETPGI RYQYNVLPQG WKGSPAIFqs smtkilEPFR KQNPEiviyq ymdDLYVGSD LEIGqhrtki eelrehllrW GFTTPDKKHQ KEPPFLWMGY ELHPDKWTVQ SIKLPEKESW TVndiqklvg klNWASQIYP GIkvrqlckl lrgtKALTEV IPLTEeaele laenreILKE PVHGVYYDPS kdliaeiqkq ghgqwtyqiy qePFKNLKTG KYARMRGAHT Ndvkqlaevv qkistesivI WGKTPKFRLP IQKetwetww veywqaTWIP EWEFVNTPPL vklwyqleKE PIIGAETFYV DGAANRETKL GKAGYVTDRG RQKVVPFTDT TNqktelqai nlalQDSGLE VNIVTDSqya lgiIQAQPDK SEselvsqii eqlikkekvy lawVPAHKGI GGNEqvdklv sqgirkvlfl dgidkaqeeh ekyhnnwraM ASDFNLPPVv akeivascdk CQLKGEAMHG QVDCSPGIWQ LDCTHLegkv ilvavhvasG YIEAEVIPAE TGQetayfil klAGRWPVKI VHTDNGSNFt saavkaacww aGIKQEFGIP YNPQSQGvve smnkelkkii gqvrdqaehl ktavqmavfi hnFKRKGGIG GYSAgeriid iiatdiqtke lqkqitkiqn frVYYRDSRD PIWKGPAKLL WKGEGAVVIQ DNSDIKVVPR RkvkiirdyG KQMAGDDCVA SRQDED
>P12499_HOTLOOPS
1-31, 283-293, 395-412, 442-495, 525-536, 595-616, 630-660, 670-696, 704-712, 719-730, 801-812, 875-887, 966-981, 1035-1064, 1366-1381, 1392-1412, 1417-1436
MGARASVLSG GKLDAWEKIR LRPGGKKKYR Lkhlvwasre lerfalnpgl letsdgckqi igqlqpairt gseelrslfn tvatlycvhe rievkdtkea lekmeeeqnk sknkkaqqaa adagnnsqvs qnypivqnlq gqmvhqaisp rtlnawvkvi eekafspevi pmfsalsega tpqdlntmln tvgghqaamq mlketineea aewdrlhpvh agpiapgqmr eprgsdiagt tstlqeqiaw mtsnppipvg eiykrwiilg lnkivrmysp vsILDIRQGP KEPfrdyvdr fyktlraeqa sqevkgwmte tllvqnanpd cktilkalgp qatleemmta cqgvggpshk arvlaeamsq atnsaaavmm qrgnfkgprk tikcFNCGKE GHIAKNCRAP RRkgcwkcgk eghqlkdcte rqanflredl aFPQGKAGEL SSEQTRANSP TSRELRVWGR DNPLSETGAE RQGTVSFNCP QITLWqrplv tikiggqlke alldtgaddt vleeMNLPGK WKPKMIggig gfikvrqydq ilieicghka igtvlvgptp vniigrnllt qigctlnfpi spieTVPVKL KPGMDGPKVK QWPLTEekik alteictemE KEGKISRVGP ENPYNTPIFA IKKKDSTKWR klvdfrelnK RTQDFWEVQL GIPHPAGLKK KKSVTVldvg dayFSVPLDK DFrkytafTI PSINNETPGI ryqynvlpqg wkgspaifqs smtkilepfr kqnpeiviyq ymddlyvgsd leigqhrtki eelrehllrw GFTTPDKKHQ KEppflwmgy elhpdkwtvq siklpekesw tvndiqklvg klnwasqiyp gikvrqlckl lrgtKALTEV IPLTEEAele laenreilke pvhgvyydps kdliaeiqkq ghgqwtyqiy qepfknlktg kyarmrgaht ndvkqlaevv qkistESIVI WGKTPKFRLP Iqketwetww veywqatwip ewefvntppl vklwyqleke piigaetfyv dgaaNRETKL GKAGYVTDRG RQKVVPFTDT TNQKtelqai nlalqdsgle vnivtdsqya lgiiqaqpdk seselvsqii eqlikkekvy lawvpahkgi ggneqvdklv sqgirkvlfl dgidkaqeeh ekyhnnwram asdfnlppvv akeivascdk cqlkgeamhg qvdcspgiwq ldcthlegkv ilvavhvasg yieaevipae tgqetayfil klagrwpvki vhtdngsnft saavkaacww agikqefgip ynpqsqgvve smnkelkkii gqvrdqaehl ktavqmavfi hnfkrkggig gysageriid iiatdiqtke lqkqiTKIQN FRVYYRDSRD Piwkgpakll wKGEGAVVIQ DNSDIKVVPR RKvkiiRDYG KQMAGDDCVA SRQDED
>P12499_REM465
1-9, 102-127, 446-464, 1098-1106, 1359-1368, 1419-1436
MGARASVLSg gkldawekir lrpggkkkyr lkhlvwasre lerfalnpgl letsdgckqi igqlqpairt gseelrslfn tvatlycvhe rievkdtkea lEKMEEEQNK SKNKKAQQAA ADAGNNSqvs qnypivqnlq gqmvhqaisp rtlnawvkvi eekafspevi pmfsalsega tpqdlntmln tvgghqaamq mlketineea aewdrlhpvh agpiapgqmr eprgsdiagt tstlqeqiaw mtsnppipvg eiykrwiilg lnkivrmysp vsildirqgp kepfrdyvdr fyktlraeqa sqevkgwmte tllvqnanpd cktilkalgp qatleemmta cqgvggpshk arvlaeamsq atnsaaavmm qrgnfkgprk tikcfncgke ghiakncrap rrkgcwkcgk eghqlkdcte rqanflredl afpqgKAGEL SSEQTRANSP TSRElrvwgr dnplsetgae rqgtvsfncp qitlwqrplv tikiggqlke alldtgaddt vleemnlpgk wkpkmiggig gfikvrqydq ilieicghka igtvlvgptp vniigrnllt qigctlnfpi spietvpvkl kpgmdgpkvk qwplteekik alteicteme kegkisrvgp enpyntpifa ikkkdstkwr klvdfrelnk rtqdfwevql giphpaglkk kksvtvldvg dayfsvpldk dfrkytafti psinnetpgi ryqynvlpqg wkgspaifqs smtkilepfr kqnpeiviyq ymddlyvgsd leigqhrtki eelrehllrw gfttpdkkhq keppflwmgy elhpdkwtvq siklpekesw tvndiqklvg klnwasqiyp gikvrqlckl lrgtkaltev iplteeaele laenreilke pvhgvyydps kdliaeiqkq ghgqwtyqiy qepfknlktg kyarmrgaht ndvkqlaevv qkistesivi wgktpkfrlp iqketwetww veywqatwip ewefvntppl vklwyqleke piigaetfyv dgaanretkl gkagyvtdrg rqkvvpftdt tnqktelqai nlalqdsgle vnivtdsqya lgiiqaqPDK SESELVsqii eqlikkekvy lawvpahkgi ggneqvdklv sqgirkvlfl dgidkaqeeh ekyhnnwram asdfnlppvv akeivascdk cqlkgeamhg qvdcspgiwq ldcthlegkv ilvavhvasg yieaevipae tgqetayfil klagrwpvki vhtdngsnft saavkaacww agikqefgip ynpqsqgvve smnkelkkii gqvrdqaehl ktavqmavfi hnfkrkggig gysageriid iiatdiqtKE LQKQITKIqn frvyyrdsrd piwkgpakll wkgegavviq dnsdikvvpr rkvkiirdYG KQMAGDDCVA SRQDED
| JOB-ID | P12499_111602Zt7Y8n8AAQEAABReAGoAAAAU |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P12499 |
| Description | sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype D (isolate Z2/CDC-Z34) OX=11683 GN=gag-pol PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 1436 |
| Download predictions | smoothed scores raw scores |