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>P18042_LOOPS
1-29, 63-76, 109-153, 164-193, 211-243, 252-264, 278-297, 307-317, 338-345, 353-360, 372-383, 392-527, 536-572, 588-597, 608-639, 655-681, 691-771, 782-790, 801-809, 822-866, 880-887, 995-1006, 1020-1073, 1097-1107, 1117-1125, 1148-1158, 1194-1201, 1253-1266, 1277-1293, 1307-1319, 1355-1368, 1403-1417, 1441-1464
MGARNSVLRG KKADELEKIR LRPSGKKKYr lkhivwaane ldkfglaesl leskegcqki ltVLDPLVPT GSENLKslfn tvcviwclha eekvkdteea kklvqrhlGA ETGTAEKMPS TSRPTAPPSG RGRNFPVQQT GGGNYIHVPL SPRtlnawvk lveDKKFGAE VVPGFQALSE GCTPYDINQM LNCvgdhqaa mqiireiind EAADWDAQHP IPGPLPAGQL RDPRGSDIAG TTStveeqiq wMYRPQNPVP VGNIyrrwiq iglqkcvRMY NPTNILDVKQ GPKEPFQsyv drfyksLRAE QTDPAVKnwm tqtlliqnan pdcklvlKGL GMNPTleeml taCQGVGGPG qkarlmaeal kEALTPPPIP FAAaqqrkvi rCWNCGKEGH SARQCRAPRR QGCWKCGKTG HVMAKCPERQ AGFLRDGSMG KEAPQLPRGP SSSGADTNST PSRSSSGSIG KIYAAGERAE GAEGETIQRG DGRLTAPRAG KSTSQRGDRG LAAPQFSLWK RPVVTAYiev qpvevLLDTG ADDSIVAGIQ LGDNYVPKIV GGIGGFINTK EIknieikvl nkrvratIMT GDTPINIfgr niltalgMSL NLPIAKIEPI KVTLKPGKDG PRLRQWPLTk ekiealreic ekmeKEGQLE EAPPTNPYNT PTFAIKKKDK Nkwrmlidfr ELNRVTQDFT EIQLGIPHPA GLAKKKRITV LDVGDAYFSI PLHEDFRQYT AFTLPSVNNA EPGKRYIYKV LPQGWKGSPA Ifqhtmrqvl ePFRKANPDV iliqymddil IASDRTGLEh dkvvlqlkel lNGLGFSTPD EKFQKDPPLQ WMGYELWPTK WKLQKLQLPQ KEIWTVndiq klvgvlnwaA QIYPGIKtkh lcrlikgkmt lteevqwtel aeaeleenki ilsqeqegyy yqeekeleat iqknqdnqwt ykihqeekil kvgkyakikn thtngvrlla qvvqkigkea lviwGRIPKF HLPVERetwe qwwdnywqvT WIPEWDFVST PPLVRLTFNL VGDPIPGAET FYTDGSCNRQ SKEGKARYVT DRGrdkvrvl erttnqqael eafamtLTDS GPKVNIIvds qyvmgiVVGQ PTESEsrivn qiiedmikke avyvawvPAH KGIGGNQEvd hlvsqgirqv lfleriepaq eehekyhsnm kelTHKFGIP Qlvarqivnt caqcqqkgea ihgqvnaeig vwqmdcthle gkiiivavhv asGFIEAEVI PQESGRqtal fllklaSRWP ITHLHTDNGS NFTsqevkmv awwigiEQSF GVPYNPQSQg vveamnhhlk nqisrireqa ntietivlma vhcmNFKRRG GIGDMTPAer linmitteqe iqflqrknsn fknfqvyyre grDQLWKGPG ELLWKGDgav ivkvgadikv iprrkakiir DYGGRQELDS SHLEGAREED GEVA
>P18042_HOTLOOPS
1-31, 108-132, 283-293, 399-411, 445-470, 476-523, 565-575, 588-597, 618-641, 655-681, 704-716, 744-752, 825-838, 1050-1080, 1094-1103, 1284-1293, 1424-1464
MGARNSVLRG KKADELEKIR LRPSGKKKYR Lkhivwaane ldkfglaesl leskegcqki ltvldplvpt gsenlkslfn tvcviwclha eekvkdteea kklvqrhLGA ETGTAEKMPS TSRPTAPPSG RGrnfpvqqt gggnyihvpl sprtlnawvk lvedkkfgae vvpgfqalse gctpydinqm lncvgdhqaa mqiireiind eaadwdaqhp ipgplpagql rdprgsdiag ttstveeqiq wmyrpqnpvp vgniyrrwiq iglqkcvrmy npTNILDVKQ GPKepfqsyv drfykslrae qtdpavknwm tqtlliqnan pdcklvlkgl gmnptleeml tacqgvggpg qkarlmaeal kealtpppip faaaqqrkvi rcwncgkeGH SARQCRAPRR Qgcwkcgktg hvmakcperq agflrdgsmg keapQLPRGP SSSGADTNST PSRSSSGSIG kiyaaGERAE GAEGETIQRG DGRLTAPRAG KSTSQRGDRG LAAPQFSLWK RPVvtayiev qpvevlldtg addsivagiq lgdnyvpkiv ggigGFINTK EIKNIeikvl nkrvratIMT GDTPINIfgr niltalgmsl nlpiakiEPI KVTLKPGKDG PRLRQWPLTK Ekiealreic ekmeKEGQLE EAPPTNPYNT PTFAIKKKDK Nkwrmlidfr elnrvtqdft eiqLGIPHPA GLAKKKritv ldvgdayfsi plhedfrqyt aftLPSVNNA EPgkryiykv lpqgwkgspa ifqhtmrqvl epfrkanpdv iliqymddil iasdrtgleh dkvvlqlkel lnglGFSTPD EKFQKDPPlq wmgyelwptk wklqklqlpq keiwtvndiq klvgvlnwaa qiypgiktkh lcrlikgkmt lteevqwtel aeaeleenki ilsqeqegyy yqeekeleat iqknqdnqwt ykihqeekil kvgkyakikn thtngvrlla qvvqkigkea lviwgripkf hlpveretwe qwwdnywqvt wipewdfvst pplvrltfnl vgdpipgaeT FYTDGSCNRQ SKEGKARYVT DRGRDKVRVL erttnqqael eafAMTLTDS GPKvniivds qyvmgivvgq ptesesrivn qiiedmikke avyvawvpah kgiggnqevd hlvsqgirqv lfleriepaq eehekyhsnm kelthkfgip qlvarqivnt caqcqqkgea ihgqvnaeig vwqmdcthle gkiiivavhv asgfieaevi pqesgrqtal fllklasrwp ithLHTDNGS NFTsqevkmv awwigieqsf gvpynpqsqg vveamnhhlk nqisrireqa ntietivlma vhcmnfkrrg gigdmtpaer linmitteqe iqflqrknsn fknfqvyyre grdqlwkgpg ellwkgdgav ivkVGADIKV IPRRKAKIIR DYGGRQELDS SHLEGAREED GEVA
>P18042_REM465
1-10, 114-131, 397-410, 441-468, 497-509, 655-664, 1451-1464
MGARNSVLRG kkadelekir lrpsgkkkyr lkhivwaane ldkfglaesl leskegcqki ltvldplvpt gsenlkslfn tvcviwclha eekvkdteea kklvqrhlga etgTAEKMPS TSRPTAPPSG Rgrnfpvqqt gggnyihvpl sprtlnawvk lvedkkfgae vvpgfqalse gctpydinqm lncvgdhqaa mqiireiind eaadwdaqhp ipgplpagql rdprgsdiag ttstveeqiq wmyrpqnpvp vgniyrrwiq iglqkcvrmy nptnildvkq gpkepfqsyv drfykslrae qtdpavknwm tqtlliqnan pdcklvlkgl gmnptleeml tacqgvggpg qkarlmaeal kealtpppip faaaqqrkvi rcwncgKEGH SARQCRAPRR qgcwkcgktg hvmakcperq agflrdgsmg KEAPQLPRGP SSSGADTNST PSRSSSGSig kiyaagerae gaegetiqrg dgrltaPRAG KSTSQRGDRg laapqfslwk rpvvtayiev qpvevlldtg addsivagiq lgdnyvpkiv ggiggfintk eiknieikvl nkrvratimt gdtpinifgr niltalgmsl nlpiakiepi kvtlkpgkdg prlrqwpltk ekiealreic ekmeKEGQLE EAPPtnpynt ptfaikkkdk nkwrmlidfr elnrvtqdft eiqlgiphpa glakkkritv ldvgdayfsi plhedfrqyt aftlpsvnna epgkryiykv lpqgwkgspa ifqhtmrqvl epfrkanpdv iliqymddil iasdrtgleh dkvvlqlkel lnglgfstpd ekfqkdpplq wmgyelwptk wklqklqlpq keiwtvndiq klvgvlnwaa qiypgiktkh lcrlikgkmt lteevqwtel aeaeleenki ilsqeqegyy yqeekeleat iqknqdnqwt ykihqeekil kvgkyakikn thtngvrlla qvvqkigkea lviwgripkf hlpveretwe qwwdnywqvt wipewdfvst pplvrltfnl vgdpipgaet fytdgscnrq skegkaryvt drgrdkvrvl erttnqqael eafamtltds gpkvniivds qyvmgivvgq ptesesrivn qiiedmikke avyvawvpah kgiggnqevd hlvsqgirqv lfleriepaq eehekyhsnm kelthkfgip qlvarqivnt caqcqqkgea ihgqvnaeig vwqmdcthle gkiiivavhv asgfieaevi pqesgrqtal fllklasrwp ithlhtdngs nftsqevkmv awwigieqsf gvpynpqsqg vveamnhhlk nqisrireqa ntietivlma vhcmnfkrrg gigdmtpaer linmitteqe iqflqrknsn fknfqvyyre grdqlwkgpg ellwkgdgav ivkvgadikv iprrkakiir dyggrqelds SHLEGAREED GEVA
| JOB-ID | P18042_162051Z0NSY38AAQEAAB2ZDT4AAAAC |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P18042 |
| Description | sp|P18042|POL_HV2G1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) OX=11717 GN=gag-pol PE=1 SV=4 |
| Title/ID | none |
| Sequence length | 1464 |
| Download predictions | smoothed scores raw scores |