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>P20875_LOOPS
1-29, 43-55, 65-73, 120-149, 162-183, 211-239, 249-260, 277-294, 349-358, 368-375, 381-424, 444-505, 516-543, 548-577, 584-618, 634-665, 680-750, 760-769, 777-787, 804-845, 900-914, 937-954, 974-987, 1000-1013, 1021-1064, 1079-1090, 1097-1105, 1127-1137, 1173-1183, 1194-1219, 1233-1246, 1256-1274, 1285-1300, 1336-1347, 1377-1414, 1423-1439
MGARASVLSG GELDRWEKIR LRPGGKKKYr lkhivwasre leRFAVNPGL LESSEgcrqi lgqlQPSLKT GSEeltslyn tvatlycvhq rieikdtkea lekieeeqtk smkkaqqaaA DTGNSSQVSQ NYPIVQNLQG QMVHQAISPr tlnawvkvie eKAFSPEVIP MFSALSEGAT PQDlntmlnt vgghqaamqm lketineeaa EWDRLHPVHA GPIAPGQMRE PRGSDIAGTt stlqeqigWM TNNPPIPVGE iykrwiilgl nkivrmYSPV SILDIRQGPK EPFRdyvdrf yktlraeqat qevknwmtet llvqnanpdc ktilkalgpa atleemmtAC QGVGGPGHka rvlaeamSQV TNPATimmqr GNFRNQRKNV KCFNCGKEGH IARNCRAPRK KGCWKCGKEG HQMKecterq anflredlaf lqgKAREFPS EQTRANSPTR RELQVWGRDS NSLSEAGAEA GADRQGIVSF NFPQITLWQR PLVTIkiggq lkealLDTGA DDTVLEDMDL PGRWKPKMIG GIGgfikVRQ YDQIPIDICG HKAVGTVLVG PTPVNIIgrn lltQIGCTLN FPISPIETVP VKLKPGMDGP KVKQWPLTee kikalveict emeKEGKISK IGPENPYNTP VFAIKKKDST KWRKLvdfre lnrrtqdfwE VQLGIPHPAG LKKKKSVTVL DVGDAYFSVP LDKDFRKYTA FTIPSINNET PGIRYQYNVL PQGWKGSPAI fqssmtkilE PFRKQNPDIi iyqymdDLYV GSDLEIGqhr tkieelrqhl lkwGFTTPDK KHQKEPPFLW MGYELHPDKW TVQPIVLPEK DSWTVndiqk lvgklnwasq iyagikvkql ckllrgtkal tevipltkea elelaenreI LKEPVHGVYY DPSKdlivei qkqgqgqwty qifqepFKNL KTGKYARTRG AHTNdvkqlt eavqkianes iviWGKIPKF KLPIQKEtwe twwteywqaT WIPEWEFVNT PPLvklwyql EKEPIVGAET FYVDGAANRE TKLGKAGYVT SRGRQKVVSL TDTTnqktel qaihlalqDS GLEVNIVTDS qyalgiIQAQ PDKSEselvs qiieqlikke kvylawVPAH KGIGGNEqvd klvsagirkv lfldgidkaq edhekyhsnw raMASDFNLP PIVakeivas cdkCQLKGEA MHGQVDCSPG IWQLDCTHLe gkiilvavhv asGYIEAEVI PAETGQetay fllklAGRWP VTTIHTDNGS NFTSttvkaa cwwaGIKQEF GIPYNPQSQG vvesmnkelk kiigqvrdqa ehlktavqma vfihnFKRKG GIGGYSAger iidiiatdiq tkelqkqitk iqnfrvYYRD NRDPIWKGPA KLLWKGEGAV VIQDNSDIKV VPRRkvkiir dyGKQMAGDD CVASRQDED
>P20875_HOTLOOPS
1-31, 282-293, 397-410, 445-468, 598-619, 634-663, 669-699, 707-715, 722-733, 805-814, 879-889, 895-908, 970-984, 1032-1066, 1264-1273, 1370-1382, 1395-1415, 1420-1439
MGARASVLSG GELDRWEKIR LRPGGKKKYR Lkhivwasre lerfavnpgl lessegcrqi lgqlqpslkt gseeltslyn tvatlycvhq rieikdtkea lekieeeqtk smkkaqqaaa dtgnssqvsq nypivqnlqg qmvhqaispr tlnawvkvie ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrlhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspv sILDIRQGPK EPFrdyvdrf yktlraeqat qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tnpatimmqr gnfrnqrknv kcfncgKEGH IARNCRAPRK kgcwkcgkeg hqmkecterq anflredlaf lqgkAREFPS EQTRANSPTR RELQVWGRds nslseagaea gadrqgivsf nfpqitlwqr plvtikiggq lkealldtga ddtvledmdl pgrwkpkmig giggfikvrq ydqipidicg hkavgtvlvg ptpvniigrn lltqigctln fpispieTVP VKLKPGMDGP KVKQWPLTEe kikalveict emeKEGKISK IGPENPYNTP VFAIKKKDST KWRklvdfRE LNRRTQDFWE VQLGIPHPAG LKKKKSVTVl dvgdayFSVP LDKDFrkyta fTIPSINNET PGIryqynvl pqgwkgspai fqssmtkile pfrkqnpdii iyqymddlyv gsdleigqhr tkieelrqhl lkwgFTTPDK KHQKeppflw mgyelhpdkw tvqpivlpek dswtvndiqk lvgklnwasq iyagikvkql ckllrgtkAL TEVIPLTKEa elelAENREI LKEPVHGVyy dpskdlivei qkqgqgqwty qifqepfknl ktgkyartrg ahtndvkqlt eavqkianeS IVIWGKIPKF KLPIqketwe twwteywqat wipewefvnt pplvklwyql ekepivgaet fYVDGAANRE TKLGKAGYVT SRGRQKVVSL TDTTNQktel qaihlalqds glevnivtds qyalgiiqaq pdkseselvs qiieqlikke kvylawvpah kgiggneqvd klvsagirkv lfldgidkaq edhekyhsnw ramasdfnlp pivakeivas cdkcqlkgea mhgqvdcspg iwqldcthle gkiilvavhv asgyieaevi paetgqetay fllklagrwp vttIHTDNGS NFTsttvkaa cwwagikqef gipynpqsqg vvesmnkelk kiigqvrdqa ehlktavqma vfihnfkrkg giggysager iidiiatdiq tkelqkqitK IQNFRVYYRD NRdpiwkgpa kllwKGEGAV VIQDNSDIKV VPRRKvkiiR DYGKQMAGDD CVASRQDED
>P20875_REM465
1-9, 106-128, 449-482, 1101-1109, 1362-1371, 1422-1439
MGARASVLSg geldrwekir lrpggkkkyr lkhivwasre lerfavnpgl lessegcrqi lgqlqpslkt gseeltslyn tvatlycvhq rieikdtkea lekieEEQTK SMKKAQQAAA DTGNSSQVsq nypivqnlqg qmvhqaispr tlnawvkvie ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrlhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspv sildirqgpk epfrdyvdrf yktlraeqat qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tnpatimmqr gnfrnqrknv kcfncgkegh iarncraprk kgcwkcgkeg hqmkecterq anflredlaf lqgkarefPS EQTRANSPTR RELQVWGRDS NSLSEAGAEA GAdrqgivsf nfpqitlwqr plvtikiggq lkealldtga ddtvledmdl pgrwkpkmig giggfikvrq ydqipidicg hkavgtvlvg ptpvniigrn lltqigctln fpispietvp vklkpgmdgp kvkqwpltee kikalveict emekegkisk igpenpyntp vfaikkkdst kwrklvdfre lnrrtqdfwe vqlgiphpag lkkkksvtvl dvgdayfsvp ldkdfrkyta ftipsinnet pgiryqynvl pqgwkgspai fqssmtkile pfrkqnpdii iyqymddlyv gsdleigqhr tkieelrqhl lkwgfttpdk khqkeppflw mgyelhpdkw tvqpivlpek dswtvndiqk lvgklnwasq iyagikvkql ckllrgtkal tevipltkea elelaenrei lkepvhgvyy dpskdlivei qkqgqgqwty qifqepfknl ktgkyartrg ahtndvkqlt eavqkianes iviwgkipkf klpiqketwe twwteywqat wipewefvnt pplvklwyql ekepivgaet fyvdgaanre tklgkagyvt srgrqkvvsl tdttnqktel qaihlalqds glevnivtds qyalgiiqaq PDKSESELVs qiieqlikke kvylawvpah kgiggneqvd klvsagirkv lfldgidkaq edhekyhsnw ramasdfnlp pivakeivas cdkcqlkgea mhgqvdcspg iwqldcthle gkiilvavhv asgyieaevi paetgqetay fllklagrwp vttihtdngs nftsttvkaa cwwagikqef gipynpqsqg vvesmnkelk kiigqvrdqa ehlktavqma vfihnfkrkg giggysager iidiiatdiq tKELQKQITK Iqnfrvyyrd nrdpiwkgpa kllwkgegav viqdnsdikv vprrkvkiir dYGKQMAGDD CVASRQDED
| JOB-ID | P20875_142710ZwqHPX8AAQEAAGAGVK0AAAAY |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P20875 |
| Description | sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF) OX=11688 GN=gag-pol PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 1439 |
| Download predictions | smoothed scores raw scores |