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>P26660_LOOPS
1-123, 159-173, 199-210, 222-257, 293-315, 380-400, 419-434, 444-457, 471-628, 649-691, 807-818, 862-876, 904-915, 949-965, 974-984, 995-1028, 1052-1061, 1088-1133, 1140-1180, 1191-1246, 1272-1331, 1351-1399, 1424-1434, 1444-1457, 1466-1518, 1528-1538, 1546-1556, 1572-1585, 1599-1609, 1616-1642, 1686-1703, 1750-1758, 1780-1790, 1800-1808, 1819-1831, 1873-1895, 1907-1915, 1928-1944, 1966-1983, 1997-2083, 2097-2150, 2157-2185, 2194-2246, 2252-2337, 2350-2474, 2479-2490, 2530-2548, 2570-2599, 2624-2639, 2652-2675, 2683-2690, 2702-2731, 2748-2756, 2766-2774, 2786-2803, 2809-2835, 2842-2855, 2892-2901, 2909-2922, 2933-2941, 2975-3007, 3026-3033
MSTNPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKDRR STGKSWGKPG YPWPLYGNEG LGWAGWLLSP RGSRPSWGPN DPRHRSRNVG KVIdtltcgf adlmgyipvv gaplggvara lahgvrvlED GVNFATGNLP GCSfsiflla llscittpvs aaevknisTG YMVTNDCTND sitwqlqaav lHVPGCVPCE KVGNTSRCWI PVSPNVAVQQ PGALTQGlrt hidmvvmsat lcsalyvgdl cggvmlaaqm fiVSPQHHWF VQDCNCSIYP GTITGhrmaw dmmmnwspta tmilayamrv peviidiigg ahwgvmfgla yfsmqgawak vvvilllaaG VDAQTHTVGG STAHNARTLT gmfslgarqk iqlintngSW HINRTALNCN DSLHtgflas lfyTHSFNSS GCPERMSacr sieafrvgwg ALQYEDNVTN PEDMRPYCWH YPPRQCGVVS ASSVCGPVYC FTPSPVVVGT TDRLGAPTYT WGENETDVFL LNSTRPPQGS WFGCTWMNST GYTKTCGAPP CRIRADFNAS MDLLCPTDCF RKHPDTTYIK CGSGPWLTPR CLIDYPYRLW HYPCTVNYti fkirmyvggv ehrltaacNF TRGDRCNLED RDRSQLSPLL HSTTEWAILP CTYSDLPALS Tgllhlhqni vdvqfmygls paltkyivrw ewvvllflll adarvcaclw mlillgqaea aleklvvlha asaascngfl yfviffvaaw yikgrvvpla tysltglwsf gllllaLPQQ AYAYDASVhg qigaallvli tlftltpgyk tllsrflwwl cylltlaeam vQEWAPPMQV RGGRDGiiwa vaifcpgvvf ditkwllavl gpaYLLKGAL TRVPYfvrah allrmctmvr hlaggryvqm vllalgrwTG TYIYDHLTPM SDWAAnglrd lavAVEPIIF SPMEkkvivw gaetAACGDI LHGLPVSARL GREVLLGPAD GYTSKGWSll apitayaqqt rgllgtivvs mTGRDKTEQA Geiqvlstvt qsflgttisg vlwtvyhGAG NKTLAGSRGP VTQMYSSAEG DLVGWPSPPG TKSLEPCTCG AVDlylvtrN ADVIPARRRG DKRGALLSPR PLSTLKGSSG GPVLCPRGHA vgvfraavcs RGVAKSIDFI PVETLDIVTR SPTFSDNSTP PAVPQTYQVG YLHAPTGSGK STKVPVayaa qgykvlvlnp svaatlgfga yLSKAHGINP NIRTGVRTVT TGAPITYSTY GKFLADGGCA GGAYDIIICD ECHAVDSTTI Lgigtvldqa etagvrltvl ATATPPGSVT TPHPNIEEVA LGQEGEIPFY GRAIPLSYIK GGRHLIFCHs kkkcdelaaa lrgmglnava yyrGLDVSVI PTQGdvvvva tdaLMTGFTG DFDSVIDcnv avtqvVDFSL DPTFTITTQT VPQDAVSRSQ RRGRTGRGRL GIYRYVSTGE RASGMFDSvv lcecydaGAA WYELTPAEtt vrlraYFNTP GLPVCQdhle fweavftglt hIDAHFLSQT KQSGEnfayl tayqatvcAR AKAPPPSWDv mwkclTRLKP TLVGPTPLLY RLGSVTNEVT LThpvtkyia tcmqadlevm tstwvlaggv laavaaycla tgcvcIIGRL HVNQRAVVAP DKEvlyeafd emeecasraa lieegqriae mlkskiqgll qqaskqaqdI QPAVQASWpk veqfwakhmw nfisgiqylA GLSTLPGNPA vasmmafsaA LTSPLSTStt illnilggWL ASQIAPPAGA Tgfvvsglvg aavgsiglgk vlvdilagyg agisgalvaf kiMSGEKPSM EDVVNLLPGI LSPGAlvvgv icaailRRHV GPGEGavqwm nrliafaSRG NHVAPTHYVT ESDAsqrvtq llgsltitsl lrrlhNWITE DCPIPCSGSW LRDvwdwvct iltdfkNWLT SKLFPKMPGL PFISCQKGYK GVWAGTGIMT TRCPCGANIS GNVRLGSMRI TGPKTCMNIW QGTFPINCYT EGQCVPKPAP NFKiaiwrva aseyaeVTQH GSYHYITGLT TDNLKVPCQL PSPEFFSWVD GVQIHRFAPI PKPFFRDEVS fcvglnSFVV GSQLPCDPEP DTDVLTSMLT DPSHItaeta arrLARGSPP SEASSSASQL SAPSLRATCT THGKAYDVDM VDANLFMGGD VTRIESeskv vVLDSLDPMV EERSDLEPSI PSEYMLPKKR FPPALPAWAR PDYNPPLVES WKRPDYQPAT VAGCALPPPK KTPTPPPRRR RTVGLSEssi adalqqlaiK SFGQPPPSGD SGLSTGADAA DSGSRTPPDE LALSETGSIS SMPPLEGEPG DPDLEPEQVE LQPPPQGGVV TPGSGSGSWS TCSEEDDSVV CCSMSYSWTG ALITPCSPEE EKLPINPLSN SLLRyhnkVY CTTSKSASLR akkvtfdrmq aldahydsvl kdiklaaskv tarlltleeA CQLTPPHSAR SKYGFGAKev rslsgravnh iksvwkdllE DTQTPIPTTI MAKNEVFCVD PTKGGKKAAr livypdlgvr vcekmalydi tqkLPQAVMG ASYGFQYSPa qrvefllkaw aEKKDPMGFS YDTRCFDSTV TERDIrtees iyRACSLPEE ahtaihslte rLYVGGPMFN SKGQTCGYRR CRASGVLTTS Mgntitcyvk alaackaAGI IAPTMLvcgd dlvviSESQG TEEDernlra fteamTRYSA PPGDPPRPEY DLElitscSS NVSVALGPQG RRRYYLTRDP TTPIAraawe tVRHSPVNSW LGNIIqyapt iwarmvlmth ffsilmaqdt ldqnlnfemy gAVYSVSPLD LpaiierlHG LDAFSLHTYT PHeltrvasa lrKLGAPPLR Awksraravr aslisrggra avcgrylfnw avktKLKLTP LPEARLLDLS SWFTVGAGGG DIYHSVSrar prllllglll lfvgvGLFLL PAR
>P26660_HOTLOOPS
1-81, 106-119, 597-608, 1140-1173, 1192-1202, 1211-1222, 1274-1292, 1353-1364, 1474-1515, 1939-1947, 2202-2214, 2264-2277, 2309-2329, 2384-2394, 2481-2491, 2528-2544, 2574-2607, 2654-2674, 2767-2775, 2786-2795, 2811-2824, 2841-2852, 2934-2943, 2953-2962, 3026-3033
MSTNPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKDRR STGKSWGKPG Ypwplygneg lgwagwllsp rgsrpSWGPN DPRHRSRNVg kvidtltcgf adlmgyipvv gaplggvara lahgvrvled gvnfatgnlp gcsfsiflla llscittpvs aaevknistg ymvtndctnd sitwqlqaav lhvpgcvpce kvgntsrcwi pvspnvavqq pgaltqglrt hidmvvmsat lcsalyvgdl cggvmlaaqm fivspqhhwf vqdcncsiyp gtitghrmaw dmmmnwspta tmilayamrv peviidiigg ahwgvmfgla yfsmqgawak vvvilllaag vdaqthtvgg stahnartlt gmfslgarqk iqlintngsw hinrtalncn dslhtgflas lfythsfnss gcpermsacr sieafrvgwg alqyednvtn pedmrpycwh ypprqcgvvs assvcgpvyc ftpspvvvgt tdrlgaptyt wgenetdvfl lnstrppqgs wfgctwmnst gytktcgapp criradfnas mdllcptdcf rkhpdtTYIK CGSGPWLTpr clidypyrlw hypctvnyti fkirmyvggv ehrltaacnf trgdrcnled rdrsqlspll hsttewailp ctysdlpals tgllhlhqni vdvqfmygls paltkyivrw ewvvllflll adarvcaclw mlillgqaea aleklvvlha asaascngfl yfviffvaaw yikgrvvpla tysltglwsf gllllalpqq ayaydasvhg qigaallvli tlftltpgyk tllsrflwwl cylltlaeam vqewappmqv rggrdgiiwa vaifcpgvvf ditkwllavl gpayllkgal trvpyfvrah allrmctmvr hlaggryvqm vllalgrwtg tyiydhltpm sdwaanglrd lavavepiif spmekkvivw gaetaacgdi lhglpvsarl grevllgpad gytskgwsll apitayaqqt rgllgtivvs mtgrdkteqa geiqvlstvt qsflgttisg vlwtvyhgag nktlagsrgp vtqmyssaeg dlvgwpsppg tkslepctcg avdlylvtrN ADVIPARRRG DKRGALLSPR PLSTLKGSSG GPVlcprgha vgvfraavcs rGVAKSIDFI PVetldivtr SPTFSDNSTP PAvpqtyqvg ylhaptgsgk stkvpvayaa qgykvlvlnp svaatlgfga ylsKAHGINP NIRTGVRTVT TGapitysty gkfladggca ggaydiiicd echavdstti lgigtvldqa etagvrltvl atATPPGSVT TPHPnieeva lgqegeipfy graiplsyik ggrhlifchs kkkcdelaaa lrgmglnava yyrgldvsvi ptqgdvvvva tdalmtgftg dfdsvidcnv avtqvvdfsl dptFTITTQT VPQDAVSRSQ RRGRTGRGRL GIYRYVSTGE RASGMfdsvv lcecydagaa wyeltpaett vrlrayfntp glpvcqdhle fweavftglt hidahflsqt kqsgenfayl tayqatvcar akapppswdv mwkcltrlkp tlvgptplly rlgsvtnevt lthpvtkyia tcmqadlevm tstwvlaggv laavaaycla tgcvciigrl hvnqravvap dkevlyeafd emeecasraa lieegqriae mlkskiqgll qqaskqaqdi qpavqaswpk veqfwakhmw nfisgiqyla glstlpgnpa vasmmafsaa ltsplststt illnilggwl asqiappaga tgfvvsglvg aavgsiglgk vlvdilagyg agisgalvaf kimsgekpsm edvvnllpgi lspgalvvgv icaailrrhv gpgegavqwm nrliafasrg nhvapthyVT ESDASQRvtq llgsltitsl lrrlhnwite dcpipcsgsw lrdvwdwvct iltdfknwlt sklfpkmpgl pfiscqkgyk gvwagtgimt trcpcganis gnvrlgsmri tgpktcmniw qgtfpincyt egqcvpkpap nfkiaiwrva aseyaevtqh gsyhyitglt tdnlkvpcql pspeffswvd gvqihrfapi pkpffrdevs fcvglnsfvv gsqlpcdpep dtdvltsmlt dpshitaeta arrlargspp sEASSSASQL SAPSlratct thgkaydvdm vdanlfmggd vtrieseskv vvldsldpmv eerSDLEPSI PSEYMLPkkr fppalpawar pdynpplves wkrpdyqpAT VAGCALPPPK KTPTPPPRRr rtvglsessi adalqqlaik sfgqpppsgd sglstgadaa dsgsrtppde lalSETGSIS SMPPlegepg dpdlepeqve lqpppqggvv tpgsgsgsws tcseeddsvv ccsmsyswtg alitpcspee eklpinplsn sllryhnkvy CTTSKSASLR Akkvtfdrmq aldahydsvl kdiklaaskv tarlltlEEA CQLTPPHSAR SKYGfgakev rslsgravnh iksvwkdlle dtqTPIPTTI MAKNEVFCVD PTKGGKKAAR LIVYPDLgvr vcekmalydi tqklpqavmg asygfqyspa qrvefllkaw aekKDPMGFS YDTRCFDSTV TERDirtees iyracslpee ahtaihslte rlyvggpmfn skgqtcgyrr crasgvltts mgntitcyvk alaackaagi iaptmlvcgd dlvvisESQG TEEDErnlra fteamTRYSA PPGDPprpey dlelitscss NVSVALGPQG RRRYyltrdp ttpiaraawe TVRHSPVNSW LGniiqyapt iwarmvlmth ffsilmaqdt ldqnlnfemy gavysvspld lpaiierlhg ldafslhtyt pheltrvasa lrkLGAPPLR AWKsraravr asLISRGGRA AVcgrylfnw avktklkltp lpearlldls swftvgaggg diyhsvsrar prllllglll lfvgvGLFLL PAR
>P26660_REM465
1-17, 47-75, 1212-1221, 1481-1492, 1739-1755, 2191-2215, 2321-2335, 2355-2381, 2415-2437, 2768-2775
MSTNPKPQRK TKRNTNRrpq dvkfpgggqi vggvyllprr gprlgvRATR KTSERSQPRG RRQPIPKDRR STGKSwgkpg ypwplygneg lgwagwllsp rgsrpswgpn dprhrsrnvg kvidtltcgf adlmgyipvv gaplggvara lahgvrvled gvnfatgnlp gcsfsiflla llscittpvs aaevknistg ymvtndctnd sitwqlqaav lhvpgcvpce kvgntsrcwi pvspnvavqq pgaltqglrt hidmvvmsat lcsalyvgdl cggvmlaaqm fivspqhhwf vqdcncsiyp gtitghrmaw dmmmnwspta tmilayamrv peviidiigg ahwgvmfgla yfsmqgawak vvvilllaag vdaqthtvgg stahnartlt gmfslgarqk iqlintngsw hinrtalncn dslhtgflas lfythsfnss gcpermsacr sieafrvgwg alqyednvtn pedmrpycwh ypprqcgvvs assvcgpvyc ftpspvvvgt tdrlgaptyt wgenetdvfl lnstrppqgs wfgctwmnst gytktcgapp criradfnas mdllcptdcf rkhpdttyik cgsgpwltpr clidypyrlw hypctvnyti fkirmyvggv ehrltaacnf trgdrcnled rdrsqlspll hsttewailp ctysdlpals tgllhlhqni vdvqfmygls paltkyivrw ewvvllflll adarvcaclw mlillgqaea aleklvvlha asaascngfl yfviffvaaw yikgrvvpla tysltglwsf gllllalpqq ayaydasvhg qigaallvli tlftltpgyk tllsrflwwl cylltlaeam vqewappmqv rggrdgiiwa vaifcpgvvf ditkwllavl gpayllkgal trvpyfvrah allrmctmvr hlaggryvqm vllalgrwtg tyiydhltpm sdwaanglrd lavavepiif spmekkvivw gaetaacgdi lhglpvsarl grevllgpad gytskgwsll apitayaqqt rgllgtivvs mtgrdkteqa geiqvlstvt qsflgttisg vlwtvyhgag nktlagsrgp vtqmyssaeg dlvgwpsppg tkslepctcg avdlylvtrn adviparrrg dkrgallspr plstlkgssg gpvlcprgha vgvfraavcs rgvaksidfi pvetldivtr sPTFSDNSTP Pavpqtyqvg ylhaptgsgk stkvpvayaa qgykvlvlnp svaatlgfga ylskahginp nirtgvrtvt tgapitysty gkfladggca ggaydiiicd echavdstti lgigtvldqa etagvrltvl atatppgsvt tphpnieeva lgqegeipfy graiplsyik ggrhlifchs kkkcdelaaa lrgmglnava yyrgldvsvi ptqgdvvvva tdalmtgftg dfdsvidcnv avtqvvdfsl dptftittqt VPQDAVSRSQ RRgrtgrgrl giyryvstge rasgmfdsvv lcecydagaa wyeltpaett vrlrayfntp glpvcqdhle fweavftglt hidahflsqt kqsgenfayl tayqatvcar akapppswdv mwkcltrlkp tlvgptplly rlgsvtnevt lthpvtkyia tcmqadlevm tstwvlaggv laavaaycla tgcvciigrl hvnqravvap dkevlyeafd emeecasraa lieegqriae mlkskiqgLL QQASKQAQDI QPAVQaswpk veqfwakhmw nfisgiqyla glstlpgnpa vasmmafsaa ltsplststt illnilggwl asqiappaga tgfvvsglvg aavgsiglgk vlvdilagyg agisgalvaf kimsgekpsm edvvnllpgi lspgalvvgv icaailrrhv gpgegavqwm nrliafasrg nhvapthyvt esdasqrvtq llgsltitsl lrrlhnwite dcpipcsgsw lrdvwdwvct iltdfknwlt sklfpkmpgl pfiscqkgyk gvwagtgimt trcpcganis gnvrlgsmri tgpktcmniw qgtfpincyt egqcvpkpap nfkiaiwrva aseyaevtqh gsyhyitglt tdnlkvpcql pspeffswvd gvqihrfapi pkpffrdevs fcvglnsfvv gsqlpcdpep dtdvltsmlt dpshitaeta ARRLARGSPP SEASSSASQL SAPSLratct thgkaydvdm vdanlfmggd vtrieseskv vvldsldpmv eersdlepsi pseymlpkkr fppalpawar pdynpplves wkrpdyqpat vagcalpppk KTPTPPPRRR RTVGLsessi adalqqlaik sfgqPPPSGD SGLSTGADAA DSGSRTPPDE Lalsetgsis smpplegepg dpdlepeqve lqppPQGGVV TPGSGSGSWS TCSEEDDsvv ccsmsyswtg alitpcspee eklpinplsn sllryhnkvy cttsksaslr akkvtfdrmq aldahydsvl kdiklaaskv tarlltleea cqltpphsar skygfgakev rslsgravnh iksvwkdlle dtqtpiptti maknevfcvd ptkggkkaar livypdlgvr vcekmalydi tqklpqavmg asygfqyspa qrvefllkaw aekkdpmgfs ydtrcfdstv terdirtees iyracslpee ahtaihslte rlyvggpmfn skgqtcgyrr crasgvltts mgntitcyvk alaackaagi iaptmlvcgd dlvviseSQG TEEDErnlra fteamtrysa ppgdpprpey dlelitscss nvsvalgpqg rrryyltrdp ttpiaraawe tvrhspvnsw lgniiqyapt iwarmvlmth ffsilmaqdt ldqnlnfemy gavysvspld lpaiierlhg ldafslhtyt pheltrvasa lrklgapplr awksraravr aslisrggra avcgrylfnw avktklkltp lpearlldls swftvgaggg diyhsvsrar prllllglll lfvgvglfll par
| JOB-ID | P26660_022238Zwsu7n8AAQEAAGAGYFcAAAAA |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P26660 |
| Description | sp|P26660|POLG_HCVJ6 Genome polyprotein OS=Hepatitis C virus genotype 2a (isolate HC-J6) OX=11113 PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 3033 |
| Download predictions | smoothed scores raw scores |