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>P26661_LOOPS
1-122, 131-145, 162-173, 199-213, 221-238, 291-314, 382-394, 419-433, 445-628, 648-691, 762-769, 861-876, 950-963, 973-984, 996-1030, 1052-1062, 1087-1133, 1139-1179, 1193-1253, 1271-1330, 1352-1399, 1424-1434, 1444-1457, 1466-1500, 1505-1519, 1528-1538, 1546-1556, 1572-1585, 1599-1609, 1616-1643, 1686-1702, 1750-1758, 1780-1790, 1800-1808, 1818-1831, 1873-1882, 1888-1895, 1928-1946, 1968-1982, 1998-2084, 2097-2149, 2159-2172, 2177-2184, 2194-2248, 2257-2337, 2352-2474, 2481-2496, 2530-2548, 2570-2611, 2624-2640, 2650-2674, 2702-2732, 2747-2755, 2767-2774, 2786-2803, 2815-2836, 2841-2858, 2893-2901, 2911-2922, 2933-2941, 2975-3008, 3026-3033
MSTNPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKDRR STGKSWGKPG YPWPLYGNEG CGWAGWLLSP RGSRPTWGPT DPRHRSRNLG RVidtitcgf ADLMGYIPVV GAPVGgvara lahgvrvled gINYATGNLP GCSfsiflla llscvtvpvs avevrnisSS YYATNDCSNN SITwqltdav LHLPGCVPCE NDNGTLHCwi qvtpnvavkh rgaltrslrt hvdmivmaat acsalyvgdv cgavmilsqa FMVSPQRHNF TQECNCSIYQ GHITghrmaw dmmlswsptl tmilayaarv pelvleiifg ghwgvvfgla yfsmqgawak viailllvag vDATTYSSGQ EAGRtvagfa glfttgakqn lylintngSW HINRTALNCN DSLqtgflas lfytHKFNSS GCPERLSSCR GLDDFRIGWG TLEYETNVTN DGDMRPYCWH YPPRPCGIVP ARTVCGPVYC FTPSPVVVGT TDKQGVPTYT WGENETDVFL LNSTRPPRGA WFGCTWMNGT GFTKTCGAPP CRIRKDYNST IDLLCPTDCF RKHPDATYLK CGAGPWLTPR CLVDYPYRLW HYPCTVNFti fkarmyvggv ehrfsaaCNF TRGDRCRLED RDRGQQSPLL HSTTEWAVLP CSFSDLPALS Tgllhlhqni vdvqylygls paltryivkw ewvillflll adaricaclw mliilgqaea alekliilhs aSAASANGPl wffifftaaw ylkgrvvpva tysvlglwsf lllvlalpqq ayaldaaeqg elglailvii siftltpayk illsrsvwwl symlvlaeaq IQQWVPPLEV RGGRDGiiwv avilhprlvf evtkwllail gpayllkasl lripyfvrah allrvctlvk hlagaryiqm llitigrwtG TYIYDHLSPL STWaaqglrd laIAVEPVVF SPMEkkvivw gaetvACGDI LHGLPVSARL GREVLLGPAD GYTSKGWKLL apitaytqqt rgllgaivvs lTGRDKNEQA GQvqvlssvt qtflgtsisg vlwtvyHGAG NKTLAGPKGP VTQMYTSAEG DLVGWPSPPG TKSLDPCTCG AVDlylvtRN ADVIPVRRKD DRRGALLSPR PLSTLKGSSG GPVLCSRGHa vglfraavca rgVAKSIDFI PVESLDVATR TPSFSDNSTP PAVPQSYQVG YLHAPTGSGK STKVPAAYAS QGYkvlvlnp svaatlgfga YMSKAHGINP NIRTGVRTVT TGDSITYSTY GKFIADGGCA AGAYDIIICD ECHSVDATTI lgigtvldqa etagvrlvvl aTATPPGTVT TPHSNIEEVA LGHEGEIPFY GKAIPLAFIK GGRHLIFCHs kkkcdelaaa lrgmgvnava yyrGLDVSVI PTQGdvvvva tdaLMTGYTG DFDSVIDcnv avsqiVDFSL DPTFTITTQT VPQDAVSRSQ RRGRTGRGRL gvyrYVSSGE RPSGMFDSVv lcecydaGAA WYELTPAEtt vrlraYFNTP GLPVCQdhle fweavftglt hIDAHFLSQT KQGGEnfayl tayqatvcAR AKAPPPSWDv mwkclTRLKP TLTGPTPLLY RLGAVTNEVT LTHpvtkyia tcmqadleim tsswvlaggv laavaaycla tgcisIIGRL HLNDRVVVAP DKeilyeafd emeecaskaa lieegqrmae mlkskiqgll qqatrqaqdI QPAIQSSWpk leqfwakhmw nfisgiqylA GLSTLPGNPA vasmmafsaA LTSPLPTStt illnimgGWL ASQIAPPAGA Tgfvvsglvg aavgsiglgk ilvdvlagyg agisgalvaf kiMSGEKPTV EDvvnllPAI LSPGAlvvgv icaailrrhv gqgegavqwm nrliafaSRG NHVAPTHYVV ESDASQrvtq vlssltitsl lrrlhawITE DCPVPCSGSW LQdiwdwvcs iltdfknWLS SKLLPKMPGI PFISCQKGYK GVWAGTGVMT TRCPCGANIS GHVRMGTMKI TGPKTCLNLW QGTFPINCYT EGPCVPKPPP NYKTaiwrva aseyveVTQH GSFSYVTGLT SDNLKVPCQV PAPEFFSWVD GVQIHRFAPV PGPFFRDEVt ftvglnsfVV GSQLPCDPEP DTevlaSMLT DPSHitaeaa arrLARGSPP SQASSSASQL SAPSLKATCT THKTAYDCDM VDANLFMGGD VTRIESDSkv ivldslDSMT EVEDDREPSV PSEYLIKRRK FPPALPPWAR PDYNPVLIET WKRPGYEPPT VLGCALPPTP QTPVPPPRRR RAKVLTQdnv egvlremadk vLSPLQDNND SGHSTGADTG GDIVQQPSDE TAASEAGSLS SMPPLEGEPG DPDLEFEPVG SAPPSEGECE VIDSDSKSWS TVSDQEDSVI CCSMSYSWTG ALITPCGPEE EKLPINPLSN SLMRfhnkvy STTSRSASLR AKKVTFdrvq vldahydsvl qdvkraaskv sarlltveeA CALTPPHSAK SRYGFGAKev rslsrravnh irsvwedllE DQHTPIDTTI MAKNEVFCID PTKGGKKPAR LIVYPDLGVR Vcekmalydi aqkLPKAIMG PSYGFQYSPA ervdfllkaW GSKKDPMGFS YDTRCFDSTV TERDirtees iyqacslpqe artvihslte rLYVGGPMTN SKGQSCGYRR CRASGVFTTS MGntmtcyik alaackAAGI VDPVMlvcgd dlvvisESQG NEEDernlra fteamTRYSA PPGDLPRPEY DLElitscss nvsvALDSRG RRRYFLTRDP TTPITRaawe TVRHSPVNSW LGNIIQYApt iwvrmvimth ffsillaqdt lnqnlnfemy gaVYSVNPLD Lpaiierlhg LEAFSLHTYS PHelsrvaat lrKLGAPPLR Awksraravr asliaqgara aicgrylfnw avktKLKLTP LPEASRLDLS GWFTVGAGGG DIYHSVSHar prllllclll lsvgvGIFLL PAR
>P26661_HOTLOOPS
1-81, 106-120, 597-607, 1138-1173, 1211-1222, 1274-1287, 1353-1363, 1475-1515, 1940-1948, 2203-2214, 2257-2290, 2312-2342, 2482-2494, 2528-2545, 2589-2603, 2652-2666, 2681-2689, 2702-2718, 2766-2776, 2786-2796, 2812-2852, 3026-3033
MSTNPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKDRR STGKSWGKPG Ypwplygneg cgwagwllsp rgsrpTWGPT DPRHRSRNLG rvidtitcgf adlmgyipvv gapvggvara lahgvrvled ginyatgnlp gcsfsiflla llscvtvpvs avevrnisss yyatndcsnn sitwqltdav lhlpgcvpce ndngtlhcwi qvtpnvavkh rgaltrslrt hvdmivmaat acsalyvgdv cgavmilsqa fmvspqrhnf tqecncsiyq ghitghrmaw dmmlswsptl tmilayaarv pelvleiifg ghwgvvfgla yfsmqgawak viailllvag vdattyssgq eagrtvagfa glfttgakqn lylintngsw hinrtalncn dslqtgflas lfythkfnss gcperlsscr glddfrigwg tleyetnvtn dgdmrpycwh ypprpcgivp artvcgpvyc ftpspvvvgt tdkqgvptyt wgenetdvfl lnstrpprga wfgctwmngt gftktcgapp crirkdynst idllcptdcf rkhpdaTYLK CGAGPWLtpr clvdypyrlw hypctvnfti fkarmyvggv ehrfsaacnf trgdrcrled rdrgqqspll hsttewavlp csfsdlpals tgllhlhqni vdvqylygls paltryivkw ewvillflll adaricaclw mliilgqaea alekliilhs asaasangpl wffifftaaw ylkgrvvpva tysvlglwsf lllvlalpqq ayaldaaeqg elglailvii siftltpayk illsrsvwwl symlvlaeaq iqqwvpplev rggrdgiiwv avilhprlvf evtkwllail gpayllkasl lripyfvrah allrvctlvk hlagaryiqm llitigrwtg tyiydhlspl stwaaqglrd laiavepvvf spmekkvivw gaetvacgdi lhglpvsarl grevllgpad gytskgwkll apitaytqqt rgllgaivvs ltgrdkneqa gqvqvlssvt qtflgtsisg vlwtvyhgag nktlagpkgp vtqmytsaeg dlvgwpsppg tksldpctcg avdlylvTRN ADVIPVRRKD DRRGALLSPR PLSTLKGSSG GPVlcsrgha vglfraavca rgvaksidfi pvesldvatr TPSFSDNSTP PAvpqsyqvg ylhaptgsgk stkvpaayas qgykvlvlnp svaatlgfga ymsKAHGINP NIRTGVRtvt tgdsitysty gkfiadggca agaydiiicd echsvdatti lgigtvldqa etagvrlvvl atATPPGTVT TPHsnieeva lghegeipfy gkaiplafik ggrhlifchs kkkcdelaaa lrgmgvnava yyrgldvsvi ptqgdvvvva tdalmtgytg dfdsvidcnv avsqivdfsl dptfTITTQT VPQDAVSRSQ RRGRTGRGRL GVYRYVSSGE RPSGMfdsvv lcecydagaa wyeltpaett vrlrayfntp glpvcqdhle fweavftglt hidahflsqt kqggenfayl tayqatvcar akapppswdv mwkcltrlkp tltgptplly rlgavtnevt lthpvtkyia tcmqadleim tsswvlaggv laavaaycla tgcisiigrl hlndrvvvap dkeilyeafd emeecaskaa lieegqrmae mlkskiqgll qqatrqaqdi qpaiqsswpk leqfwakhmw nfisgiqyla glstlpgnpa vasmmafsaa ltsplptstt illnimggwl asqiappaga tgfvvsglvg aavgsiglgk ilvdvlagyg agisgalvaf kimsgekptv edvvnllpai lspgalvvgv icaailrrhv gqgegavqwm nrliafasrg nhvapthyvV ESDASQRVtq vlssltitsl lrrlhawite dcpvpcsgsw lqdiwdwvcs iltdfknwls skllpkmpgi pfiscqkgyk gvwagtgvmt trcpcganis ghvrmgtmki tgpktclnlw qgtfpincyt egpcvpkppp nyktaiwrva aseyvevtqh gsfsyvtglt sdnlkvpcqv papeffswvd gvqihrfapv pgpffrdevt ftvglnsfvv gsqlpcdpep dtevlasmlt dpshitaeaa arrlargspp sqASSSASQL SAPSlkatct thktaydcdm vdanlfmggd vtriesdskv ivldslDSMT EVEDDREPSV PSEYLIKRRK FPPALPPWAR pdynpvliet wkrpgyeppt vLGCALPPTP QTPVPPPRRR RAKVLTQDNV EGvlremadk vlsplqdnnd sghstgadtg gdivqqpsde taaseagsls smpplegepg dpdlefepvg sappsegece vidsdsksws tvsdqedsvi ccsmsyswtg alitpcgpee eklpinplsn slmrfhnkvy sTTSRSASLR AKKVtfdrvq vldahydsvl qdvkraaskv sarlltvEEA CALTPPHSAK SRYGFgakev rslsrravnh irsvwedlle dqhtpidtti maknevfcID PTKGGKKPAR LIVypdlgvr vcekmalydi aqklpkaimg psygfqyspa ervdfllkaw gSKKDPMGFS YDTRCFdstv terdirtees IYQACSLPQe artvihslte rLYVGGPMTN SKGQSCGYrr crasgvftts mgntmtcyik alaackaagi vdpvmlvcgd dlvviSESQG NEEDERnlra fteamTRYSA PPGDLPrpey dlelitscss nVSVALDSRG RRRYFLTRDP TTPITRAAWE TVRHSPVNSW LGniiqyapt iwvrmvimth ffsillaqdt lnqnlnfemy gavysvnpld lpaiierlhg leafslhtys phelsrvaat lrklgapplr awksraravr asliaqgara aicgrylfnw avktklkltp lpeasrldls gwftvgaggg diyhsvshar prllllclll lsvgvGIFLL PAR
>P26661_REM465
1-17, 47-75, 1209-1222, 1481-1492, 1741-1751, 2191-2216, 2259-2270, 2377-2390, 2410-2436
MSTNPKPQRK TKRNTNRrpq dvkfpgggqi vggvyllprr gprlgvRATR KTSERSQPRG RRQPIPKDRR STGKSwgkpg ypwplygneg cgwagwllsp rgsrptwgpt dprhrsrnlg rvidtitcgf adlmgyipvv gapvggvara lahgvrvled ginyatgnlp gcsfsiflla llscvtvpvs avevrnisss yyatndcsnn sitwqltdav lhlpgcvpce ndngtlhcwi qvtpnvavkh rgaltrslrt hvdmivmaat acsalyvgdv cgavmilsqa fmvspqrhnf tqecncsiyq ghitghrmaw dmmlswsptl tmilayaarv pelvleiifg ghwgvvfgla yfsmqgawak viailllvag vdattyssgq eagrtvagfa glfttgakqn lylintngsw hinrtalncn dslqtgflas lfythkfnss gcperlsscr glddfrigwg tleyetnvtn dgdmrpycwh ypprpcgivp artvcgpvyc ftpspvvvgt tdkqgvptyt wgenetdvfl lnstrpprga wfgctwmngt gftktcgapp crirkdynst idllcptdcf rkhpdatylk cgagpwltpr clvdypyrlw hypctvnfti fkarmyvggv ehrfsaacnf trgdrcrled rdrgqqspll hsttewavlp csfsdlpals tgllhlhqni vdvqylygls paltryivkw ewvillflll adaricaclw mliilgqaea alekliilhs asaasangpl wffifftaaw ylkgrvvpva tysvlglwsf lllvlalpqq ayaldaaeqg elglailvii siftltpayk illsrsvwwl symlvlaeaq iqqwvpplev rggrdgiiwv avilhprlvf evtkwllail gpayllkasl lripyfvrah allrvctlvk hlagaryiqm llitigrwtg tyiydhlspl stwaaqglrd laiavepvvf spmekkvivw gaetvacgdi lhglpvsarl grevllgpad gytskgwkll apitaytqqt rgllgaivvs ltgrdkneqa gqvqvlssvt qtflgtsisg vlwtvyhgag nktlagpkgp vtqmytsaeg dlvgwpsppg tksldpctcg avdlylvtrn advipvrrkd drrgallspr plstlkgssg gpvlcsrgha vglfraavca rgvaksidfi pvesldvaTR TPSFSDNSTP PAvpqsyqvg ylhaptgsgk stkvpaayas qgykvlvlnp svaatlgfga ymskahginp nirtgvrtvt tgdsitysty gkfiadggca agaydiiicd echsvdatti lgigtvldqa etagvrlvvl atatppgtvt tphsnieeva lghegeipfy gkaiplafik ggrhlifchs kkkcdelaaa lrgmgvnava yyrgldvsvi ptqgdvvvva tdalmtgytg dfdsvidcnv avsqivdfsl dptftittqt VPQDAVSRSQ RRgrtgrgrl gvyryvssge rpsgmfdsvv lcecydagaa wyeltpaett vrlrayfntp glpvcqdhle fweavftglt hidahflsqt kqggenfayl tayqatvcar akapppswdv mwkcltrlkp tltgptplly rlgavtnevt lthpvtkyia tcmqadleim tsswvlaggv laavaaycla tgcisiigrl hlndrvvvap dkeilyeafd emeecaskaa lieegqrmae mlkskiqgll QQATRQAQDI Qpaiqsswpk leqfwakhmw nfisgiqyla glstlpgnpa vasmmafsaa ltsplptstt illnimggwl asqiappaga tgfvvsglvg aavgsiglgk ilvdvlagyg agisgalvaf kimsgekptv edvvnllpai lspgalvvgv icaailrrhv gqgegavqwm nrliafasrg nhvapthyvv esdasqrvtq vlssltitsl lrrlhawite dcpvpcsgsw lqdiwdwvcs iltdfknwls skllpkmpgi pfiscqkgyk gvwagtgvmt trcpcganis ghvrmgtmki tgpktclnlw qgtfpincyt egpcvpkppp nyktaiwrva aseyvevtqh gsfsyvtglt sdnlkvpcqv papeffswvd gvqihrfapv pgpffrdevt ftvglnsfvv gsqlpcdpep dtevlasmlt dpshitaeaa ARRLARGSPP SQASSSASQL SAPSLKatct thktaydcdm vdanlfmggd vtriesdskv ivldsldsMT EVEDDREPSV pseylikrrk fppalppwar pdynpvliet wkrpgyeppt vlgcalpptp qtpvppprrr rakvltqdnv egvlremadk vlsplqdnnd sghstgadtg gdivqqPSDE TAASEAGSLS smpplegepg dpdlefepvG SAPPSEGECE VIDSDSKSWS TVSDQEdsvi ccsmsyswtg alitpcgpee eklpinplsn slmrfhnkvy sttsrsaslr akkvtfdrvq vldahydsvl qdvkraaskv sarlltveea caltpphsak srygfgakev rslsrravnh irsvwedlle dqhtpidtti maknevfcid ptkggkkpar livypdlgvr vcekmalydi aqklpkaimg psygfqyspa ervdfllkaw gskkdpmgfs ydtrcfdstv terdirtees iyqacslpqe artvihslte rlyvggpmtn skgqscgyrr crasgvftts mgntmtcyik alaackaagi vdpvmlvcgd dlvvisesqg needernlra fteamtrysa ppgdlprpey dlelitscss nvsvaldsrg rrryfltrdp ttpitraawe tvrhspvnsw lgniiqyapt iwvrmvimth ffsillaqdt lnqnlnfemy gavysvnpld lpaiierlhg leafslhtys phelsrvaat lrklgapplr awksraravr asliaqgara aicgrylfnw avktklkltp lpeasrldls gwftvgaggg diyhsvshar prllllclll lsvgvgifll par
| JOB-ID | P26661_022332ZwsvJH8AAQEAAGAHw0QAAABE |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P26661 |
| Description | sp|P26661|POLG_HCVJ8 Genome polyprotein OS=Hepatitis C virus genotype 2b (isolate HC-J8) OX=11115 PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 3033 |
| Download predictions | smoothed scores raw scores |