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>P26664_LOOPS
1-122, 132-146, 161-173, 185-211, 220-258, 287-315, 381-395, 403-411, 419-435, 444-623, 645-688, 777-789, 858-870, 945-962, 987-1021, 1045-1056, 1078-1176, 1188-1245, 1267-1327, 1348-1363, 1368-1395, 1420-1430, 1440-1532, 1542-1554, 1567-1584, 1595-1605, 1613-1626, 1687-1699, 1709-1719, 1776-1785, 1796-1804, 1869-1879, 1884-1891, 1903-1911, 1924-1939, 1965-1977, 1998-2079, 2097-2167, 2174-2182, 2188-2224, 2238-2247, 2252-2271, 2284-2334, 2349-2444, 2454-2476, 2507-2530, 2547-2589, 2602-2619, 2630-2656, 2680-2711, 2725-2735, 2763-2812, 2820-2832, 2865-2901, 2911-2919, 2953-2989, 3003-3011
MSTNPKPQKK NKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKARR PEGRTWAQPG YPWPLYGNEG CGWAGWLLSP RGSRPSWGPT DPRRRSRNLG KVidtltcgf aDLMGYIPLV GAPLGGaara lahgvrvled GVNYATGNLP GCSfsiflla llscLTVPAS AYQVRNSTGL YHVTNDCPNS SivyeaadaI LHTPGCVPCV REGNASRCWV AMTPTVATRD GKLPATQLrr hidllvgsat lcsalyvgdl cgsvflVGQL FTFSPRRHWT TQGCNCSIYP GHITGhrmaw dmmmnwsptt alvmaqllri pqaildmiag ahwgvlagia yfsmvgnwak vlvvlllfag VDAETHVTGG SAGHTvsgfv slLAPGAKQN VqlintngSW HLNSTALNCN DSLNTgwlag lfyHHKFNSS GCPERLASCR PLTDFDQGWG PISYANGSGP DQRPYCWHYP PKPCGIVPAK SVCGPVYCFT PSPVVVGTTD RSGAPTYSWG ENDTDVFVLN NTRPPLGNWF GCTWMNSTGF TKVCGAPPCV IGGAGNNTLH CPTDCFRKHP DATYSRCGSG PWITPRCLVD YPYRLWHYPC TINytifkir myvggvehrl eaacNWTRGE RCDLEDRDRS ELSPLLLTTT QWQVLPCSFT TLPALSTGli hlhqnivdvq ylygvgssia swaikweyvv llfllladar vcsclwmmll isqaeaalen lvilnaasla gthglvsflv ffcfawYLKG KWVPGAVYTf ygmwplllll lalpqrayal dtevaascgg vvlvglmalt lspyykryis wclwwlqyfl trveaqlHVW IPPLNVRGGR davillmcav hptlvfditk lllavfgplw ilqasllkvp yfvrvqgllr fcalarkmig ghyvqmviik lgalTGTYVY NHLTPLRDWA HNglrdlava vepvvfsqme tklitwGADT AACGDIINGL PVSARRGREI LLGPADGMVS Kgwrllapit ayaqqtrgll gciiTSLTGR DKNQVEgevq ivstaaqtfl atcingvCWT VYHGAGTRTI ASPKGPVIQM YTNVDQDLVG WPAPQGSRSL TPCTCGSSDL YLVTRHADVI PVRRRGDSRG SLLSPRPISY LKGSSGGPLL CPAGHAvgif raavctrGVA KAVDFIPVEN LETTMRSPVF TDNSSPPVVP QSFQVAHLHA PTGSGKSTKV PAAYAaqgyk vlvlnpsvaa tlgfgaYMSK AHGIDPNIRT GVRTITTGSP ITYSTYGKFL ADGGCSGGAY DIIICDECHS TDATSILgig tvldqaetag arlvvlaTAT PPGSVTVPHP NIEevalSTT GEIPFYGKAI PLEVIKGGRH LIFCHskkkc delaaklval ginavayyrG LDVSVIPTSG dvvvvatdaL MTGYTGDFDS VIDCNTCVTQ TVDFSLDPTF TIETITLPQD AVSRTQRRGR TGRGKPGIYR FVAPGERPSG MFDSSVLCEC YDAGCAWYEL TPaettvrlr aYMNTPGLPV CQDHlefweg vftgltHIDA HFLSQTKQSG ENLPylvayq atvcARAQAP PPSWDqmwkc liRLKPTLHG PTPLLYrlga vqneitlthp vtkyimtcms adlevvtstw vlvggvlaal aayclstgcv vivgrvVLSG KPAIIPDREv lyrefdemEE CSQHLPYIEq gmmlaeqfkq kalgllqtas rqaeviapav qtnwqkletf wakhmwnfis giqylAGLST LPGNPaiasl maftaAVTSP LTTSqtllfn ilggwvaaql aapgaatafv gaglagaaig svglgkvlid ilagygagva galvafkiMS GEVPSTEDLv nllPAILSPG Alvvgvvcaa ilRRHVGPGE Gavqwmnrli afaSRGNHVS PTHYVPESDa aarvtailss ltvtqllrrl hqwiSSECTT PCSGSWLrdi wdwicevlsd fktwlkaKLM PQLPGIPFVS CQRGYKGVWR VDGIMHTRCH CGAEITGHVK NGTMRIVGPR TCRNMWSGTF PINAYTTGPC TPLPAPNYTf alwrvsaeey veirqvGDFH YVTGMTTDNL KCPCQVPSPE FFTELDGVRL HRFAPPCKPL LREEVSFRVG LHEYPVGSQL PCEPEPDvav ltsMLTDPSH ITaeaagRRL ARGSPPSVAS SSASQLSAPS LKATCTANHD SPDAeliean llwrqemGGN ITRVESEnkv vILDSFDPLV AEEDEREISV Paeilrksrr faqALPVWAR PDYNPPLVET WKKPDYEPPV VHGCPLPPPK SPPVPPPRKK RTVVltestl stalaelaTR SFGSSSTSGI TGDNTTTSSE PAPSGCPPDS DAESYSSMPP LEGEPGDPDL SDGSWSTVSS EANAEDVVCC SMSYSWTGAL VTPCAAEEQK LPINalsnsl lrhHNLVYST TSRSACQRQK KVTFDRlqvl dshyqdvlke vkaaaskvka nllsveEACS LTPPHSAKSK FGYGAKDVRC harkavthin svwkdlLEDN VTPIDTTIMA KNEVFCVQPE KGGRKPARLI VFPDLGVRVc ekmalydvvt kLPLAVMGSS YGFQYSPGQr veflvqawkS KKTPMGFSYD TRCFDSTVTE SDIRTEeaiy qccdldpqar vaikslterL YVGGPLTNSR GENCGYRRCR ASGVLTTSCG Ntltcyikar aacrAAGLQD CTMLVcgddl vvicesagvq edaaslraft eaMTRYSAPP GDPPQPEYDL ELITSCSSNV SVAHDGAGKR VYYLTRDPTT PLaraawetA RHTPVNSWLG NIimfaptlw armilmthff svliardqle qaldCEIYGA CYSIEPLDLP PIIQRLHGLS AFSLHSYSPG Einrvaaclr KLGVPPLRAw rhrarsvrar llarggraai cgkylfnwav rtKLKLTPIA AAGQLDLSGW FTAGYSGGDI YHSVSHARPr wiwfclllla agVGIYLLPN R
>P26664_HOTLOOPS
1-77, 103-120, 245-255, 294-305, 593-604, 1134-1155, 1270-1282, 1349-1359, 1471-1509, 1686-1696, 2033-2044, 2154-2163, 2241-2250, 2256-2276, 2282-2295, 2317-2328, 2346-2375, 2459-2469, 2507-2523, 2566-2585, 2633-2644, 2678-2697, 2820-2831, 2914-2922
MSTNPKPQKK NKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKARR PEGRTWAqpg ypwplygneg cgwagwllsp rgSRPSWGPT DPRRRSRNLG kvidtltcgf adlmgyiplv gaplggaara lahgvrvled gvnyatgnlp gcsfsiflla llscltvpas ayqvrnstgl yhvtndcpns sivyeaadai lhtpgcvpcv regnasrcwv amtpTVATRD GKLPAtqlrr hidllvgsat lcsalyvgdl cgsvflvgql ftfSPRRHWT TQGCNcsiyp ghitghrmaw dmmmnwsptt alvmaqllri pqaildmiag ahwgvlagia yfsmvgnwak vlvvlllfag vdaethvtgg saghtvsgfv sllapgakqn vqlintngsw hlnstalncn dslntgwlag lfyhhkfnss gcperlascr pltdfdqgwg pisyangsgp dqrpycwhyp pkpcgivpak svcgpvycft pspvvvgttd rsgaptyswg endtdvfvln ntrpplgnwf gctwmnstgf tkvcgappcv iggagnntlh cptdcfrkhp daTYSRCGSG PWITprclvd ypyrlwhypc tinytifkir myvggvehrl eaacnwtrge rcdledrdrs elsplllttt qwqvlpcsft tlpalstgli hlhqnivdvq ylygvgssia swaikweyvv llfllladar vcsclwmmll isqaeaalen lvilnaasla gthglvsflv ffcfawylkg kwvpgavytf ygmwplllll lalpqrayal dtevaascgg vvlvglmalt lspyykryis wclwwlqyfl trveaqlhvw ipplnvrggr davillmcav hptlvfditk lllavfgplw ilqasllkvp yfvrvqgllr fcalarkmig ghyvqmviik lgaltgtyvy nhltplrdwa hnglrdlava vepvvfsqme tklitwgadt aacgdiingl pvsarrgrei llgpadgmvs kgwrllapit ayaqqtrgll gciitsltgr dknqvegevq ivstaaqtfl atcingvcwt vyhgagtrti aspkgpviqm ytnvdqdlvg wpapqgsrsl tpctcgssdl ylvTRHADVI PVRRRGDSRG SLLSPrpisy lkgssggpll cpaghavgif raavctrgva kavdfipven lettmrspvf tdnssppvvp qsfqvahlha ptgsgkstkv paayaaqgyk vlvlnpsvaa tlgfgaymsK AHGIDPNIRT GVrtittgsp itystygkfl adggcsggay diiicdechs tdatsilgig tvldqaetag arlvvlatAT PPGSVTVPHp nieevalstt geipfygkai plevikggrh lifchskkkc delaaklval ginavayyrg ldvsviptsg dvvvvatdal mtgytgdfds vidcntcvtq tvdfsldptf TIETITLPQD AVSRTQRRGR TGRGKPGIYR FVAPGERPSg mfdssvlcec ydagcawyel tpaettvrlr aymntpglpv cqdhlefweg vftglthida hflsqtkqsg enlpylvayq atvcaraqap ppswdqmwkc lirlkptlhg ptpllyrlga vqneitlthp vtkyimtcms adlevvtstw vlvggvlaal aayclstgcv vivgrVVLSG KPAIIPdrev lyrefdemee csqhlpyieq gmmlaeqfkq kalgllqtas rqaeviapav qtnwqkletf wakhmwnfis giqylaglst lpgnpaiasl maftaavtsp lttsqtllfn ilggwvaaql aapgaatafv gaglagaaig svglgkvlid ilagygagva galvafkims gevpstedlv nllpailspg alvvgvvcaa ilrrhvgpge gavqwmnrli afasrgnhvs pthyvpesda aarvtailss ltvtqllrrl hqwissectt pcsgswlrdi wdwicevlsd fktwlkaklm pqlpgipfvs cqrgykgvwr vdgimhtrch cgAEITGHVK NGTMrivgpr tcrnmwsgtf pinayttgpc tplpapnytf alwrvsaeey veirqvgdfh yvtgmttdnl kcpcqvpspe ffteldgvrl hrfappckpl lreevsfrvg lheYPVGSQL PCEpepdvav ltsmltdpsh itaeaagrrl argsppsvas ssasqlsaps lkatctanhd spdaeliean llwrqemggn ITRVESENKV vildsFDPLV AEEDEREISV PAEILRksrr fAQALPVWAR PDYNPplvet wkkpdyeppv vhgcplPPPK SPPVPPPRkk rtvvltestl stalaELATR SFGSSSTSGI TGDNTTTSSE PAPSGcppds daesyssmpp legepgdpdl sdgswstvss eanaedvvcc smsyswtgal vtpcaaeeqk lpinalsnsl lrhhnlvyST TSRSACQRQk kvtfdrlqvl dshyqdvlke vkaaaskvka nllsveEACS LTPPHSAKSK FGYgakdvrc harkavthin svwkdlledn vtpidttima knevfCVQPE KGGRKPARLI VFPDLgvrvc ekmalydvvt klplavmgss ygfqyspgqr veflvqawks kkTPMGFSYD TRCFdstvte sdirteeaiy qccdldpqar vaiksltERL YVGGPLTNSR GENCGYRrcr asgvlttscg ntltcyikar aacraaglqd ctmlvcgddl vvicesagvq edaaslraft eamtrysapp gdppqpeydl elitscssnv svahdgagkr vyyltrdptt plaraawetA RHTPVNSWLG Niimfaptlw armilmthff svliardqle qaldceiyga cysiepldlp piiqrlhgls afslhsyspg einrvaaclr klgVPPLRAW RHrarsvrar llarggraai cgkylfnwav rtklkltpia aagqldlsgw ftagysggdi yhsvsharpr wiwfclllla agvgiyllpn r
>P26664_REM465
1-16, 47-74, 103-113, 2187-2214, 2320-2334, 2351-2412
MSTNPKPQKK NKRNTNrrpq dvkfpgggqi vggvyllprr gprlgvRATR KTSERSQPRG RRQPIPKARR PEGRtwaqpg ypwplygneg cgwagwllsp rgSRPSWGPT DPRrrsrnlg kvidtltcgf adlmgyiplv gaplggaara lahgvrvled gvnyatgnlp gcsfsiflla llscltvpas ayqvrnstgl yhvtndcpns sivyeaadai lhtpgcvpcv regnasrcwv amtptvatrd gklpatqlrr hidllvgsat lcsalyvgdl cgsvflvgql ftfsprrhwt tqgcncsiyp ghitghrmaw dmmmnwsptt alvmaqllri pqaildmiag ahwgvlagia yfsmvgnwak vlvvlllfag vdaethvtgg saghtvsgfv sllapgakqn vqlintngsw hlnstalncn dslntgwlag lfyhhkfnss gcperlascr pltdfdqgwg pisyangsgp dqrpycwhyp pkpcgivpak svcgpvycft pspvvvgttd rsgaptyswg endtdvfvln ntrpplgnwf gctwmnstgf tkvcgappcv iggagnntlh cptdcfrkhp datysrcgsg pwitprclvd ypyrlwhypc tinytifkir myvggvehrl eaacnwtrge rcdledrdrs elsplllttt qwqvlpcsft tlpalstgli hlhqnivdvq ylygvgssia swaikweyvv llfllladar vcsclwmmll isqaeaalen lvilnaasla gthglvsflv ffcfawylkg kwvpgavytf ygmwplllll lalpqrayal dtevaascgg vvlvglmalt lspyykryis wclwwlqyfl trveaqlhvw ipplnvrggr davillmcav hptlvfditk lllavfgplw ilqasllkvp yfvrvqgllr fcalarkmig ghyvqmviik lgaltgtyvy nhltplrdwa hnglrdlava vepvvfsqme tklitwgadt aacgdiingl pvsarrgrei llgpadgmvs kgwrllapit ayaqqtrgll gciitsltgr dknqvegevq ivstaaqtfl atcingvcwt vyhgagtrti aspkgpviqm ytnvdqdlvg wpapqgsrsl tpctcgssdl ylvtrhadvi pvrrrgdsrg sllsprpisy lkgssggpll cpaghavgif raavctrgva kavdfipven lettmrspvf tdnssppvvp qsfqvahlha ptgsgkstkv paayaaqgyk vlvlnpsvaa tlgfgaymsk ahgidpnirt gvrtittgsp itystygkfl adggcsggay diiicdechs tdatsilgig tvldqaetag arlvvlatat ppgsvtvphp nieevalstt geipfygkai plevikggrh lifchskkkc delaaklval ginavayyrg ldvsviptsg dvvvvatdal mtgytgdfds vidcntcvtq tvdfsldptf tietitlpqd avsrtqrrgr tgrgkpgiyr fvapgerpsg mfdssvlcec ydagcawyel tpaettvrlr aymntpglpv cqdhlefweg vftglthida hflsqtkqsg enlpylvayq atvcaraqap ppswdqmwkc lirlkptlhg ptpllyrlga vqneitlthp vtkyimtcms adlevvtstw vlvggvlaal aayclstgcv vivgrvvlsg kpaiipdrev lyrefdemee csqhlpyieq gmmlaeqfkq kalgllqtas rqaeviapav qtnwqkletf wakhmwnfis giqylaglst lpgnpaiasl maftaavtsp lttsqtllfn ilggwvaaql aapgaatafv gaglagaaig svglgkvlid ilagygagva galvafkims gevpstedlv nllpailspg alvvgvvcaa ilrrhvgpge gavqwmnrli afasrgnhvs pthyvpesda aarvtailss ltvtqllrrl hqwissectt pcsgswlrdi wdwicevlsd fktwlkaklm pqlpgipfvs cqrgykgvwr vdgimhtrch cgaeitghvk ngtmrivgpr tcrnmwsgtf pinayttgpc tplpapnytf alwrvsaeey veirqvgdfh yvtgmttdnl kcpcqvpspe ffteldgvrl hrfappckpl lreevsfrvg lheypvgsql pcepepdvav ltsmltdpsh itaeaaGRRL ARGSPPSVAS SSASQLSAPS LKATctanhd spdaeliean llwrqemggn itrvesenkv vildsfdplv aeedereisv paeilrksrr faqalpvwar pdynpplvet wkkpdyeppv vhgcplpppK SPPVPPPRKK RTVVltestl stalaelatr SFGSSSTSGI TGDNTTTSSE PAPSGCPPDS DAESYSSMPP LEGEPGDPDL SDGSWSTVSS EAnaedvvcc smsyswtgal vtpcaaeeqk lpinalsnsl lrhhnlvyst tsrsacqrqk kvtfdrlqvl dshyqdvlke vkaaaskvka nllsveeacs ltpphsaksk fgygakdvrc harkavthin svwkdlledn vtpidttima knevfcvqpe kggrkparli vfpdlgvrvc ekmalydvvt klplavmgss ygfqyspgqr veflvqawks kktpmgfsyd trcfdstvte sdirteeaiy qccdldpqar vaikslterl yvggpltnsr gencgyrrcr asgvlttscg ntltcyikar aacraaglqd ctmlvcgddl vvicesagvq edaaslraft eamtrysapp gdppqpeydl elitscssnv svahdgagkr vyyltrdptt plaraaweta rhtpvnswlg niimfaptlw armilmthff svliardqle qaldceiyga cysiepldlp piiqrlhgls afslhsyspg einrvaaclr klgvpplraw rhrarsvrar llarggraai cgkylfnwav rtklkltpia aagqldlsgw ftagysggdi yhsvsharpr wiwfclllla agvgiyllpn r
| JOB-ID | P26664_152901Zt8UPX8AAQEAABReBkYAAAAX |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P26664 |
| Description | sp|P26664|POLG_HCV1 Genome polyprotein OS=Hepatitis C virus genotype 1a (isolate 1) OX=11104 PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 3011 |
| Download predictions | smoothed scores raw scores |