>P27410_LOOPS
1-112, 127-145, 152-163, 177-197, 232-243, 292-299, 364-377, 390-397, 468-486, 505-528, 537-561, 566-575, 586-629, 647-699, 709-731, 754-778, 802-814, 829-845, 890-954, 992-1014, 1040-1081, 1087-1161, 1166-1224, 1247-1314, 1325-1334, 1370-1392, 1422-1442, 1468-1481, 1490-1512, 1554-1564, 1590-1611, 1627-1651, 1660-1672, 1751-1799, 1807-1867, 1892-1953, 1963-1971, 1979-2074, 2084-2136, 2145-2162, 2175-2182, 2189-2225, 2235-2261, 2266-2276, 2291-2344
MAAMSRLTGM TTAILPEKKP LDFFLDLRDK TPPCCIRATG RLAWPVFPGQ NGKEGPLETC NKCGKWLNGF GNFGLEDLGD VCLCSIAQQK HKFGPVCLCN RVYIHDCGRW RRrsrflkhy kalnkvIPCA YQFDESFPTP IFEGEvddlf vELGAPTSMG FMDkkllkkg kklmdkFVDV DEPCLTSRDT SLLDSIAsdn tirakleeey gvemvqaard rkdfmknlrl aLDNRPANPV TWYtklgnit ekgkqwakkv vygarkvtdp lktlasillv glhnviavdt tVMLSTFKPv nllailmdwn ndltgfittl vrllelygvv qatvnliieg vksfwdkvvc atdrcfdllk rlfDTFEDSV PTGPTAGcli fmafvfstvV GYLPNNSvit tfmkgagklt tfagvvgair tlwitinqhm vakdltsvqq kvmtvvkman eaatldqlei vsclcsdLET TLTNRCTLPS YNQHLGilna sqkvisdlht mvlgKINMTK QRPQPVAVIF KGAPGIGKty lvhriaRDLG CQHPSTINFG LDHFDSYTGE EvaiaDEFNT CGDGEswvel fiqmvNTNPC PLNCDKAENK NKVFNSKYLL CTTNSNMILN ATHPRAGAFy rrvmivearn kaveswQATR HGSKPGKSCY SKDMSHLTFQ VYPHNMPAPG FVFVGDKLVK SQVTPREYKy selldlikSE HPDVASFEGA NKFNFVYPDA Qydqallmwk qyfvmygcva rlaKNFVDDI PYNQVHISRA SDPKIEGCve yqckfqhlwr mvpqfvlgcv nMTNQLGTPL TQQQldritn gvegvtvtTV NNILPFHSQT TLINPsfikl iwavrkhlkg lsgvtkvaqf iwrvmtnpvd aygtlvrtlT GAATFSDDPV STTIICSNCT IQLHSCGGLL VRYSRDPVPV ASDNVDRGDQ GVDVFTDPNL ISGFswrqia hlfvevishl canhlvnlat maalgavatk aFQGVKGKTK RGRGARVNLG NDEYdewqaa rrefvnahdm taeeylamkN KAAMGSDDQD SIMFRSWWTR RQLRPEEDQV TIVGRSGVRN EvirtrVRQT PRGPKTLDDG GFYDNDYEGL PGFMRHNGSG WMIHIGNGLY ISNTHTARSS CSEIVTCSPT TDLCLVKGES IrsvaQIAEG TPVCDWKKSP ISTYGIKKTL SDSTKIDVLA YDGCTQTTHG DCGLPLYDSS GKIVaihtgk llgfskmctl idltitKGVY ETSNFFCGEP IDYRGITAHR LVGAEPRPPV SGTRYAKVPG VPDEYKTGYR PANLGRSDPD SDKSlmniav knlqVYQQEP KLDKvdefie raaadvlgyl rfltkgerqa nlnfkaafnT LDLSTSCGPF VPGKKIDHVK DGvmdqvlak hlykcwsvan sgkalhhiya cGLKDELRPL DKVKEGKKRL LWgcdvgvav caaavfhnic yklkmvaRFG PIAVGVDMTS RdvdviinnL TSKASDFLCL DYSKWDSTMS PCvvrlaidi ladcceqtel tksvvltlks hpmtildami vqtKRGLPSG MPFTsvinsi chwllwsaav ykscaeiglH CSNLYEDAPF YTYGDDGVYA Mtpmmvsllp aiienlRDYG LSPTAADKTE FIDVCPLNKI SflkrtfelT DIGWVSKLDK SSilrqlews kttsrhmvie etydlakeer gvqleelqva aaahgqeffn fvcrelerqq aytqfsvysy daarkiladr KRVVSVVPDD EFVNVMEGKA RAAPQGEAAG TATTASVPGT TTDGMDPGVv attsviTAEN SSASIATAGI GGPPQQVDQQ ETWRTNFYYN DVFTWSVADA PGSILYTVQH SPQNNPFtav lsqmyagwag gmqfrfivag sGVFGGRLVR AVIPPGIEIG PGLEVRQFPH VVIDARSLEP VTITMPDLRP NMYHPTGDPG LVPtlvlsvy nnLINPFGGS TsaiqvtvET RPSEDFEFVM IRAPSSKTVD SISPAGLLTT PVLTGVGNDN RWNGQIVGLQ PVPGGFSTCN RHWNLNGSTY GWSSPRFGDI DHRRGSASYS GSNAtnvlqf wyaNAGSAID NPISQVAPDG FPDMSFVPFN GPGIPAAGWV GFGAIWNSNS GAPNVTtvqa yelgFATGAP GNLQPTTNTS GAqtvaksiy avvtGTAQNP AGlfvmasGI ISTPNASAIT YTPQPDRIVT TPGTPAAAPV GKNTPimfas vvrrTGDVNA TAGSANGTQY GTGSQPLPVT IglslNNYSS ALMPGQffvw qltfasgfme IGLSVDGYFY AGTGASTTLI DLTELIDVRP VGPRPSKSTL VFNLGGTANG FSYV
>P27410_HOTLOOPS
1-20, 90-99, 181-212, 230-241, 246-255, 507-516, 644-658, 767-775, 932-943, 991-1015, 1040-1050, 1059-1102, 1165-1195, 1270-1312, 1662-1687, 1749-1765, 1770-1796, 1994-2006, 2213-2223, 2242-2255, 2320-2344
MAAMSRLTGM TTAILPEKKP ldffldlrdk tppcciratg rlawpvfpgq ngkegpletc nkcgkwlngf gnfgledlgd vclcsiaqqK HKFGPVCLCn rvyihdcgrw rrrsrflkhy kalnkvipca yqfdesfptp ifegevddlf velgaptsmg fmdkkllkkg kklmdkfvdv DEPCLTSRDT SLLDSIASDN TIRAKLEEEY GVemvqaard rkdfmknlrL ALDNRPANPV TwytkLGNIT EKGKQwakkv vygarkvtdp lktlasillv glhnviavdt tvmlstfkpv nllailmdwn ndltgfittl vrllelygvv qatvnliieg vksfwdkvvc atdrcfdllk rlfdtfedsv ptgptagcli fmafvfstvv gylpnnsvit tfmkgagklt tfagvvgair tlwitinqhm vakdltsvqq kvmtvvkman eaatldqlei vsclcsdlet tltnrctlps ynqhlgilna sqkvisdlht mvlgkiNMTK QRPQPVavif kgapgigkty lvhriardlg cqhpstinfg ldhfdsytge evaiadefnt cgdgeswvel fiqmvntnpc plncdkaenk nkvfnskyll cttnsnmiln athpragafy rrvmivearn kavESWQATR HGSKPGKScy skdmshltfq vyphnmpapg fvfvgdklvk sqvtpreyky selldlikse hpdvasfega nkfnfvypda qydqallmwk qyfvmygcva rlaknfvddi pynqvhISRA SDPKIegcve yqckfqhlwr mvpqfvlgcv nmtnqlgtpl tqqqldritn gvegvtvttv nnilpfhsqt tlinpsfikl iwavrkhlkg lsgvtkvaqf iwrvmtnpvd aygtlvrtlt gaatfsddpv sttiicsnct iqlhscggll vrysrdpvpv aSDNVDRGDQ GVDvftdpnl isgfswrqia hlfvevishl canhlvnlat maalgavatk AFQGVKGKTK RGRGARVNLG NDEYDewqaa rrefvnahdm taeeylamkN KAAMGSDDQD simfrswwTR RQLRPEEDQV TIVGRSGVRN EVIRTRVRQT PRGPKTLDDG GFydndyegl pgfmrhngsg wmihigngly isnthtarss cseivtcspt tdlclvkges irsvAQIAEG TPVCDWKKSP ISTYGIKKTL SDSTKidvla ydgctqtthg dcglplydss gkivaihtgk llgfskmctl idltitkgvy etsnffcgep idyrgitahR LVGAEPRPPV SGTRYAKVPG VPDEYKTGYR PANLGRSDPD SDkslmniav knlqvyqqep kldkvdefie raaadvlgyl rfltkgerqa nlnfkaafnt ldlstscgpf vpgkkidhvk dgvmdqvlak hlykcwsvan sgkalhhiya cglkdelrpl dkvkegkkrl lwgcdvgvav caaavfhnic yklkmvarfg piavgvdmts rdvdviinnl tskasdflcl dyskwdstms pcvvrlaidi ladcceqtel tksvvltlks hpmtildami vqtkrglpsg mpftsvinsi chwllwsaav ykscaeiglh csnlyedapf ytygddgvya mtpmmvsllp aiienlrdyg lsptaadkte fidvcplnki sflkrtfelt dIGWVSKLDK SSILRQLEWS KTTSRHMvie etydlakeer gvqleelqva aaahgqeffn fvcrelerqq aytqfsvysy daarkilaDR KRVVSVVPDD EFVNVmegkA RAAPQGEAAG TATTASVPGT TTDGMDpgvv attsvitaen ssasiatagi ggppqqvdqq etwrtnfyyn dvftwsvada pgsilytvqh spqnnpftav lsqmyagwag gmqfrfivag sgvfggrlvr avippgieig pglevrqfph vvidarslep vtitmpdlrp nmyhptgdpg lvptlvlsvy nnlinpfggs tsaiqvtvet rpsedfefvm iraPSSKTVD SISPAGlltt pvltgvgndn rwngqivglq pvpggfstcn rhwnlngsty gwssprfgdi dhrrgsasys gsnatnvlqf wyanagsaid npisqvapdg fpdmsfvpfn gpgipaagwv gfgaiwnsns gapnvttvqa yelgfatgap gnlqpttnts gaqtvaksiy avvtgtaqnp aglfvmasgi istpnasait ytpqpdrivt tpGTPAAAPV GKNtpimfas vvrrtgdvna tAGSANGTQY GTGSQplpvt iglslnnyss almpgqffvw qltfasgfme iglsvdgyfy agtgasttli dltelidvrP VGPRPSKSTL VFNLGGTANG FSYV
>P27410_REM465
1-8, 642-659, 994-1003, 1770-1784
MAAMSRLTgm ttailpekkp ldffldlrdk tppcciratg rlawpvfpgq ngkegpletc nkcgkwlngf gnfgledlgd vclcsiaqqk hkfgpvclcn rvyihdcgrw rrrsrflkhy kalnkvipca yqfdesfptp ifegevddlf velgaptsmg fmdkkllkkg kklmdkfvdv depcltsrdt slldsiasdn tirakleeey gvemvqaard rkdfmknlrl aldnrpanpv twytklgnit ekgkqwakkv vygarkvtdp lktlasillv glhnviavdt tvmlstfkpv nllailmdwn ndltgfittl vrllelygvv qatvnliieg vksfwdkvvc atdrcfdllk rlfdtfedsv ptgptagcli fmafvfstvv gylpnnsvit tfmkgagklt tfagvvgair tlwitinqhm vakdltsvqq kvmtvvkman eaatldqlei vsclcsdlet tltnrctlps ynqhlgilna sqkvisdlht mvlgkinmtk qrpqpvavif kgapgigkty lvhriardlg cqhpstinfg ldhfdsytge evaiadefnt cgdgeswvel fiqmvntnpc plncdkaenk nkvfnskyll cttnsnmiln athpragafy rrvmivearn kAVESWQATR HGSKPGKSCy skdmshltfq vyphnmpapg fvfvgdklvk sqvtpreyky selldlikse hpdvasfega nkfnfvypda qydqallmwk qyfvmygcva rlaknfvddi pynqvhisra sdpkiegcve yqckfqhlwr mvpqfvlgcv nmtnqlgtpl tqqqldritn gvegvtvttv nnilpfhsqt tlinpsfikl iwavrkhlkg lsgvtkvaqf iwrvmtnpvd aygtlvrtlt gaatfsddpv sttiicsnct iqlhscggll vrysrdpvpv asdnvdrgdq gvdvftdpnl isgfswrqia hlfvevishl canhlvnlat maalgavatk afqGVKGKTK RGRgarvnlg ndeydewqaa rrefvnahdm taeeylamkn kaamgsddqd simfrswwtr rqlrpeedqv tivgrsgvrn evirtrvrqt prgpktlddg gfydndyegl pgfmrhngsg wmihigngly isnthtarss cseivtcspt tdlclvkges irsvaqiaeg tpvcdwkksp istygikktl sdstkidvla ydgctqtthg dcglplydss gkivaihtgk llgfskmctl idltitkgvy etsnffcgep idyrgitahr lvgaeprppv sgtryakvpg vpdeyktgyr panlgrsdpd sdkslmniav knlqvyqqep kldkvdefie raaadvlgyl rfltkgerqa nlnfkaafnt ldlstscgpf vpgkkidhvk dgvmdqvlak hlykcwsvan sgkalhhiya cglkdelrpl dkvkegkkrl lwgcdvgvav caaavfhnic yklkmvarfg piavgvdmts rdvdviinnl tskasdflcl dyskwdstms pcvvrlaidi ladcceqtel tksvvltlks hpmtildami vqtkrglpsg mpftsvinsi chwllwsaav ykscaeiglh csnlyedapf ytygddgvya mtpmmvsllp aiienlrdyg lsptaadkte fidvcplnki sflkrtfelt digwvskldk ssilrqlews kttsrhmvie etydlakeer gvqleelqva aaahgqeffn fvcrelerqq aytqfsvysy daarkiladr krvvsvvpdd efvnvmegkA RAAPQGEAAG TATTasvpgt ttdgmdpgvv attsvitaen ssasiatagi ggppqqvdqq etwrtnfyyn dvftwsvada pgsilytvqh spqnnpftav lsqmyagwag gmqfrfivag sgvfggrlvr avippgieig pglevrqfph vvidarslep vtitmpdlrp nmyhptgdpg lvptlvlsvy nnlinpfggs tsaiqvtvet rpsedfefvm irapssktvd sispaglltt pvltgvgndn rwngqivglq pvpggfstcn rhwnlngsty gwssprfgdi dhrrgsasys gsnatnvlqf wyanagsaid npisqvapdg fpdmsfvpfn gpgipaagwv gfgaiwnsns gapnvttvqa yelgfatgap gnlqpttnts gaqtvaksiy avvtgtaqnp aglfvmasgi istpnasait ytpqpdrivt tpgtpaaapv gkntpimfas vvrrtgdvna tagsangtqy gtgsqplpvt iglslnnyss almpgqffvw qltfasgfme iglsvdgyfy agtgasttli dltelidvrp vgprpskstl vfnlggtang fsyv
JOB-ID | P27410_151135Zt8QJ38AAQEAABReBcIAAAAM |
---|---|
Frames used | smooth=8 peak=8 join=4 |
Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
Name | P27410 |
Description | sp|P27410|POLG_RHDVF Genome polyprotein OS=Rabbit hemorrhagic disease virus (strain Rabbit/Germany/FRG/1989) OX=314536 GN=ORF1 PE=1 SV=1 |
Title/ID | none |
Sequence length | 2344 |
Download predictions | smoothed scores raw scores |