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>P29846_LOOPS
1-122, 132-145, 160-173, 186-193, 203-211, 220-257, 289-315, 380-393, 419-433, 447-624, 645-688, 778-787, 858-871, 904-912, 946-963, 970-979, 986-1027, 1043-1056, 1079-1177, 1188-1221, 1227-1245, 1257-1327, 1348-1396, 1420-1430, 1439-1533, 1543-1553, 1567-1584, 1595-1605, 1612-1628, 1688-1699, 1709-1718, 1776-1786, 1795-1805, 1816-1827, 1869-1878, 1884-1891, 1903-1911, 1924-1940, 1965-1978, 1996-2078, 2098-2141, 2151-2167, 2174-2182, 2189-2203, 2215-2225, 2238-2272, 2277-2335, 2350-2442, 2455-2468, 2506-2531, 2547-2588, 2600-2618, 2628-2653, 2680-2711, 2726-2735, 2762-2811, 2819-2831, 2865-2879, 2887-2900, 2909-2918, 2932-2941, 2952-2966, 2973-2986, 3002-3010
MSTNGKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTWERSQPRG RRQPIPKARQ PEGRAWAQPG YPWPLYGNEG LGWAGWLVSP RGSRPNWGPT DPRRRSRNLG KVidtltcgf aDLMGYIPLV GAPLGgvara lahgvrvleD GVNYATGNLP GCSfsiflla llsclTIPAS AYEvhnvsgi yhVTNDCSNS SivyeaadmI MHTPGCVPCV RENNSSRCWV ALTPTLAARN NSVPTATirr hvdllvgaaa fcsamyvgdl cgsvflvsQL FTFSPRRYET VQDCNCSIYP GHVTGhrmaw dmmmnwsptt alvvsqllri pqavvdmvgg ahwgvlagla yysmvgnwak vlivmllfaG VDGSTIVSGG TVArtthsla slftqgasqk iqlintngSW HINRTALNCN DSLqtgflas lfyahrFNAS GCPERMASCR SIDKFDQGWG PITYTEADIQ DQRPYCWHYA PRPCGIVPAS QVCGPVYCFT PSPVVVGTTD RFGAPTYSWG ENETDVLILN NTRPPQGNWF GCTWMNSTGF TKTCGGPPCN IGGGGNNTLV CPTDCFRKHP EATYTKCGSG PWLTPRCMVD YPYRLWHYPC TVNFtifkvr myvggvehrl naacNWTRGE RCDLEDRDRS ELSPLLLSTT EWQILPCSFT GLPALSTGli hlhqnvvdvq ylygigsavv sfaikweyil llfllladar vcaclwmmll iaqaeaalen lvvfnaasva gmhgtlsflv ffcaawyIKG RLVPGAAyal ygvwplllll lalpprayam dremaascgg avfvglvllt lsphykmfla rliwwlqyfi traeahlQVW IPPLNVRGGR Daiilltcaa ypelifditk illailgplm vlqAGLTRIP YFvraqglir acmlvrkaag ghyvqmalmk laaltGTYVY DHLTPLQDWA HTGlrdlavA VEPVVFSDMe tkiitWGADT AACGDIILGL PVSARRGREI LLGPADSLEG RGWRLLApit ayaqqtrglf gcIITSLTGR DKNQVEgevq vvstatqsfl atcingvcWT VYHGAGSKTL AGPKGPITQM YTNVDQDLVG WHAPQGARSL TPCTCGSSDL YLVTRHADVI PVRRRGDSRG SLLSPRPISY LKGSSGGPLL CPSGHVVgif raavctrGVA KAVDFVPVES METTMRSPVF TDNSSPPAVP QafqvaHLHA PTGSGKSTKV PAAYAaqgyk vlvlnpSVAA TLGFGAYMSK AHGVDPNIRT GVRTITTGAP ITYSTYGKFL ADGGCSGGAY DIIMCDECHS TDSTTILgig tvldqaetag arlvvlaTAT PPGSVTVPHP NIEEIALSNT GEIPFYGKAI PIETIKGGRH LIFCHSkkkc delaaklsal gihavayyrG LDVSVIPASG nvvvvatdAL MTGFTGDFDS VIDCNTCVTQ TVDFSLDPTF TIETTTMPQD AVSRSQRRGR TSRGRRGIYR FVTPGERPSG MFDSSVLCEC YDAGCAWYEL TPAetsvrlr ayLNTPGLPV CQDhlefwes vftgltHIDA HFLSQTKQAG DNFPylvayq atvcARAQAP PPSWDqmwkc lTRLKPTLHG PTPLLYRLga vqnevtlthp itkyimacms adlevvtstw vlvggvlaal aayclttgsv vivgriiLSG KPAVVPDREv lyqefdemEE CASHLPYIeq gmqlaeqfkq kalgllqtat kqaeaaapvv eskwrtleaf wandmwnfis giqylAGLST LPGNPAiasl maftASITSP LTTQStllfn ilggwVAAQL APPGAASafv gagiagaavg siglgkvlvd mvagygagva galvafkvMS GEMPSTEDlv nllPAILSPG Alvvgvvcaa ilRRHVDPGE Gavqwmnrli afaSRGNHVS PTHYVPESDA aarvtqilsg ltitqllrrl hqwiNEDCST PCSGSWLRdv wdwictvlad fktwlQSKLL PRLPGVPFFS CQRGYKGVWR GDGIMQTTCP CGAQLTGHVK NGSMRIWGPK TCSNTWHGTF PINAYTTGPC TPSPAPNYsr alwrvaaeey vevrrvgDFH YVTGMTTDNV KCPCQVPAPE FFTEVDGVRL HRYAPACKPL Lreevsfqvg LNQYVVGSQL PCEPEPDvav ltsMLTDPSH ITaetakrRL ARGSPPSLAS SSAsqlsals lkaaCTTRHT PPDADliean llwrqemGGN ITRVESENKV VILDSFDPLR AEEDEREVSV PAeilrKSRK FPPALPVWAR PDYNPPLLEP WKDPDYVPPV VHGCPLPPVK APPIPPPRRK RTVVLtestv ssalaelatK TFGSSESSAA GSGTATAPPD QPSDDGDAGS DVESCSSMPP LEGEPGDPDL SDGSWSTVSE EDGEGVICCS MSYTWTGALI TPCAAEESKL PInalsnsll rhhnMVYATT SRSASQRQkk vtidrlqvld dhyrdvlkem kakastvkak llsveEACKL TPPHSARSKF GYGAKDVRNL Sgkainhirs vwkdllEDTE TPIDTTIMAK NEVFCVQPEK GGRKPARLIV FPDLGVRVce kmalydvvsT LPQAVMGSSY GFQYSPGQrv eflvnawKSK KCPMGFSYDT RCFDSTVTES DIRveesiyq ccdlapearq airslterlY IGGPLTNSKG QNCGYRRCRA SGVLTTSCGN Tltcylkasa acraaKLQDC TMLVCgddlv vicesagtqe daaslrvfte aMTRYSAPPG DLPQPEYDQE LITSCSSNVS VAHDASGKRV YYLTRDPTTP LaraawatAR HTPVNSWLGN Iimyaptlwa rmilmthffs illaqeqlek aldcQIYGAC YSIEPLDLPq iierlhGLSA FSLHSYSPGE inrvasclRK LGVPPLRAwr hrarsvrakl lSQGGRAATC Grylfnwavk tKLKLTPIPA ASQLDLskwf vaGYGGGDIY HSLSRArprw fmlcllllsv gVGIYLLPNR
>P29846_HOTLOOPS
1-76, 104-120, 245-255, 593-604, 641-658, 1013-1021, 1135-1155, 1270-1282, 1350-1359, 1471-1511, 1687-1695, 1999-2010, 2240-2250, 2255-2289, 2317-2329, 2392-2402, 2458-2478, 2506-2524, 2565-2581, 2681-2694, 2789-2799, 2819-2829, 2929-2940, 3000-3010
MSTNGKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTWERSQPRG RRQPIPKARQ PEGRAWaqpg ypwplygneg lgwagwlvsp rgsRPNWGPT DPRRRSRNLG kvidtltcgf adlmgyiplv gaplggvara lahgvrvled gvnyatgnlp gcsfsiflla llscltipas ayevhnvsgi yhvtndcsns sivyeaadmi mhtpgcvpcv rennssrcwv altpTLAARN NSVPTatirr hvdllvgaaa fcsamyvgdl cgsvflvsql ftfsprryet vqdcncsiyp ghvtghrmaw dmmmnwsptt alvvsqllri pqavvdmvgg ahwgvlagla yysmvgnwak vlivmllfag vdgstivsgg tvartthsla slftqgasqk iqlintngsw hinrtalncn dslqtgflas lfyahrfnas gcpermascr sidkfdqgwg pityteadiq dqrpycwhya prpcgivpas qvcgpvycft pspvvvgttd rfgaptyswg enetdvliln ntrppqgnwf gctwmnstgf tktcggppcn iggggnntlv cptdcfrkhp eaTYTKCGSG PWLTprcmvd ypyrlwhypc tvnftifkvr myvggvehrl NAACNWTRGE RCDLEDRDrs elsplllstt ewqilpcsft glpalstgli hlhqnvvdvq ylygigsavv sfaikweyil llfllladar vcaclwmmll iaqaeaalen lvvfnaasva gmhgtlsflv ffcaawyikg rlvpgaayal ygvwplllll lalpprayam dremaascgg avfvglvllt lsphykmfla rliwwlqyfi traeahlqvw ipplnvrggr daiilltcaa ypelifditk illailgplm vlqagltrip yfvraqglir acmlvrkaag ghyvqmalmk laaltgtyvy dhltplqdwa htglrdlava vepvvfsdme tkiitwgadt aacgdiilgl pvsarrgrei llGPADSLEG Rgwrllapit ayaqqtrglf gciitsltgr dknqvegevq vvstatqsfl atcingvcwt vyhgagsktl agpkgpitqm ytnvdqdlvg whapqgarsl tpctcgssdl ylvtRHADVI PVRRRGDSRG SLLSPrpisy lkgssggpll cpsghvvgif raavctrgva kavdfvpves mettmrspvf tdnssppavp qafqvahlha ptgsgkstkv paayaaqgyk vlvlnpsvaa tlgfgaymsK AHGVDPNIRT GVrtittgap itystygkfl adggcsggay diimcdechs tdsttilgig tvldqaetag arlvvlataT PPGSVTVPHp nieeialsnt geipfygkai pietikggrh lifchskkkc delaaklsal gihavayyrg ldvsvipasg nvvvvatdal mtgftgdfds vidcntcvtq tvdfsldptf TIETTTMPQD AVSRSQRRGR TSRGRRGIYR FVTPGERPSG Mfdssvlcec ydagcawyel tpaetsvrlr aylntpglpv cqdhlefwes vftglthida hflsqtkqag dnfpylvayq atvcaraqap ppswdqmwkc ltrlkptlhg ptpllyrlga vqnevtlthp itkyimacms adlevvtstw vlvggvlaal aayclttgsv vivgriILSG KPAVVpdrev lyqefdemee cashlpyieq gmqlaeqfkq kalgllqtat kqaeaaapvv eskwrtleaf wandmwnfis giqylaglst lpgnpaiasl maftasitsp lttqstllfn ilggwvaaql appgaasafv gagiagaavg siglgkvlvd mvagygagva galvafkvms gempstedlv nllpailspg alvvgvvcaa ilrrhvdpge gavqwmnrli afasrgnhvs pthyvpesda aarvtqilsg ltitqllrrl hqwinedcst pcsgswlrdv wdwictvlad fktwlqskLL PRLPGVPFFS cqrgykgvwr gdgimqttcp cgaqltghvk ngsmriwgpk tcsntwhgtf pinayttgpc tpspapnysr alwrvaaeey vevrrvgdfh yvtgmttdnv kcpcqvpape fftevdgvrl hryapackpl lreevsfqvg lnqyvvgsql pcepepdvav ltsmltdpsh itaetakrrl argsppslas ssasqlsals lkaacttrht ppdadliean llwrqemggN ITRVESENKV vildSFDPLR AEEDEREVSV PAEILRKSRK FPPALPVWAr pdynppllep wkdpdyvppv vhgcplPPVK APPIPPPRRk rtvvltestv ssalaelatk tfgssessaa gsgtatappd qpsddgdags dvescssmpp lEGEPGDPDL SDgswstvse edgegviccs msytwtgali tpcaaeeskl pinalsnsll rhhnmvyATT SRSASQRQKK VTIDRLQVld dhyrdvlkem kakastvkak llsveEACKL TPPHSARSKF GYGAkdvrnl sgkainhirs vwkdlledte tpidttimak nevfCVQPEK GGRKPARLIV Fpdlgvrvce kmalydvvst lpqavmgssy gfqyspgqrv eflvnawksk kcpmgfsydt rcfdstvtes dirveesiyq ccdlapearq airslterly IGGPLTNSKG QNCGyrrcra sgvlttscgn tltcylkasa acraaklqdc tmlvcgddlv vicesagtqe daaslrvfte amtrysappg dlpqpeydqe litscssnVS VAHDASGKRv yyltrdpttp laraawatAR HTPVNSWLGn iimyaptlwa rmilmthffs illaqeqlek aldcqiygac ysiepldlpq iierlhglsa fslhsyspge inrvasclrk lgvpplrawr hrarsvraKL LSQGGRAATC grylfnwavk tklkltpipa asqldlskwf vagygggdiy hslsrarprw fmlcllllsV GVGIYLLPNR
>P29846_REM465
1-16, 51-75, 1479-1492, 1739-1750, 2187-2207, 2351-2412, 2459-2469
MSTNGKPQRK TKRNTNrrpq dvkfpgggqi vggvyllprr gprlgvratr KTWERSQPRG RRQPIPKARQ PEGRAwaqpg ypwplygneg lgwagwlvsp rgsrpnwgpt dprrrsrnlg kvidtltcgf adlmgyiplv gaplggvara lahgvrvled gvnyatgnlp gcsfsiflla llscltipas ayevhnvsgi yhvtndcsns sivyeaadmi mhtpgcvpcv rennssrcwv altptlaarn nsvptatirr hvdllvgaaa fcsamyvgdl cgsvflvsql ftfsprryet vqdcncsiyp ghvtghrmaw dmmmnwsptt alvvsqllri pqavvdmvgg ahwgvlagla yysmvgnwak vlivmllfag vdgstivsgg tvartthsla slftqgasqk iqlintngsw hinrtalncn dslqtgflas lfyahrfnas gcpermascr sidkfdqgwg pityteadiq dqrpycwhya prpcgivpas qvcgpvycft pspvvvgttd rfgaptyswg enetdvliln ntrppqgnwf gctwmnstgf tktcggppcn iggggnntlv cptdcfrkhp eatytkcgsg pwltprcmvd ypyrlwhypc tvnftifkvr myvggvehrl naacnwtrge rcdledrdrs elsplllstt ewqilpcsft glpalstgli hlhqnvvdvq ylygigsavv sfaikweyil llfllladar vcaclwmmll iaqaeaalen lvvfnaasva gmhgtlsflv ffcaawyikg rlvpgaayal ygvwplllll lalpprayam dremaascgg avfvglvllt lsphykmfla rliwwlqyfi traeahlqvw ipplnvrggr daiilltcaa ypelifditk illailgplm vlqagltrip yfvraqglir acmlvrkaag ghyvqmalmk laaltgtyvy dhltplqdwa htglrdlava vepvvfsdme tkiitwgadt aacgdiilgl pvsarrgrei llgpadsleg rgwrllapit ayaqqtrglf gciitsltgr dknqvegevq vvstatqsfl atcingvcwt vyhgagsktl agpkgpitqm ytnvdqdlvg whapqgarsl tpctcgssdl ylvtrhadvi pvrrrgdsrg sllsprpisy lkgssggpll cpsghvvgif raavctrgva kavdfvpves mettmrspvf tdnssppavp qafqvahlha ptgsgkstkv paayaaqgyk vlvlnpsvaa tlgfgaymsk ahgvdpnirt gvrtittgap itystygkfl adggcsggay diimcdechs tdsttilgig tvldqaetag arlvvlatat ppgsvtvphp nieeialsnt geipfygkai pietikggrh lifchskkkc delaaklsal gihavayyrg ldvsvipasg nvvvvatdal mtgftgdfds vidcntcvtq tvdfsldptf tietttmpQD AVSRSQRRGR TSrgrrgiyr fvtpgerpsg mfdssvlcec ydagcawyel tpaetsvrlr aylntpglpv cqdhlefwes vftglthida hflsqtkqag dnfpylvayq atvcaraqap ppswdqmwkc ltrlkptlhg ptpllyrlga vqnevtlthp itkyimacms adlevvtstw vlvggvlaal aayclttgsv vivgriilsg kpavvpdrev lyqefdemee cashlpyieq gmqlaeqfkq kalgllqtAT KQAEAAAPVV eskwrtleaf wandmwnfis giqylaglst lpgnpaiasl maftasitsp lttqstllfn ilggwvaaql appgaasafv gagiagaavg siglgkvlvd mvagygagva galvafkvms gempstedlv nllpailspg alvvgvvcaa ilrrhvdpge gavqwmnrli afasrgnhvs pthyvpesda aarvtqilsg ltitqllrrl hqwinedcst pcsgswlrdv wdwictvlad fktwlqskll prlpgvpffs cqrgykgvwr gdgimqttcp cgaqltghvk ngsmriwgpk tcsntwhgtf pinayttgpc tpspapnysr alwrvaaeey vevrrvgdfh yvtgmttdnv kcpcqvpape fftevdgvrl hryapackpl lreevsfqvg lnqyvvgsql pcepepdvav ltsmltdpsh itaetaKRRL ARGSPPSLAS SSASQLSals lkaacttrht ppdadliean llwrqemggn itrvesenkv vildsfdplr aeederevsv paeilrksrk fppalpvwar pdynppllep wkdpdyvppv vhgcplppvk appippprrk rtvvltestv ssalaelatk TFGSSESSAA GSGTATAPPD QPSDDGDAGS DVESCSSMPP LEGEPGDPDL SDGSWSTVSE EDgegviccs msytwtgali tpcaaeeskl pinalsnsll rhhnmvyaTT SRSASQRQKk vtidrlqvld dhyrdvlkem kakastvkak llsveeackl tpphsarskf gygakdvrnl sgkainhirs vwkdlledte tpidttimak nevfcvqpek ggrkparliv fpdlgvrvce kmalydvvst lpqavmgssy gfqyspgqrv eflvnawksk kcpmgfsydt rcfdstvtes dirveesiyq ccdlapearq airslterly iggpltnskg qncgyrrcra sgvlttscgn tltcylkasa acraaklqdc tmlvcgddlv vicesagtqe daaslrvfte amtrysappg dlpqpeydqe litscssnvs vahdasgkrv yyltrdpttp laraawatar htpvnswlgn iimyaptlwa rmilmthffs illaqeqlek aldcqiygac ysiepldlpq iierlhglsa fslhsyspge inrvasclrk lgvpplrawr hrarsvrakl lsqggraatc grylfnwavk tklkltpipa asqldlskwf vagygggdiy hslsrarprw fmlcllllsv gvgiyllpnr
| JOB-ID | P29846_134642Zt78Qn8AAQEAABReA6kAAAAD |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P29846 |
| Description | sp|P29846|POLG_HCVTW Genome polyprotein OS=Hepatitis C virus genotype 1b (isolate Taiwan) OX=31645 PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 3010 |
| Download predictions | smoothed scores raw scores |