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>P55980_LOOPS
1-24, 38-62, 75-88, 94-108, 129-139, 149-159, 178-187, 202-211, 223-258, 264-295, 307-349, 360-389, 412-419, 446-460, 482-532, 541-552, 707-717, 732-741, 753-764, 782-789, 830-839, 884-917, 937-997, 1052-1065, 1072-1096, 1105-1134, 1170-1186
MTNETIDQTR TPDQTQSQTA FDPQqfinnl qvafikvDNV VASFDPDQKP IVDKNDRDNR QAfdgisqlr eeysNKAIKN PTKKNQYFsd fidKSNDLIN KDNLIDVEss tksfqkfgdq ryqiftswVS HQKDPSKINt rsirnfmeNI IQPPIPDDKe kaeflksakq sfagiiiGNQ IRTDQKFmgv fdeslkerqe aEKNGGPTGG Dwldiflsfi fnKKQSSDVK EAINQEPVPH VQPDIATTTT DIQGLPPEar dllDERGNFS KFTLGDMEML DVEGVADIDP NYKFNqllih nnalssVLMG SHNGIEPEKV SLLYAGNGGF GDKHDWNATV GYKDQQGNNv atlinvhmkN GSGLVIAGGE KGINNPSFYL YKEDQLTGSq ralsqeeirn kvdfmeflaq nNTKLDNLSe kekekfqnei edfqkdskay ldalgNDRIA FVSKKDTKHS alitefnngd lsytlkdygk kADKALDREK NVTLQGSLKH DGVMFVDYSN FKYTNASKNP NKGVGATNGV SHleagfnkv AVFNLPDLNN LAitsfvrrn lenkltakgl slqeanklik dflssnkela gkalnfnkav aeakstgnyd evkkaqkdle kslrkrehle kevekklesk sgnknkmeak aqansqkdei falinkeanr daraiaytqn lkgikrelsd klekiskdlk dfsksfDEFK NGKNKDFska eetlkalkgs vKDLGINPEW Iskvenlnaa lnEFKNGKNK DFSKvtqaks dlensvkdvi iNQKVTDKVd nlnqavsvak amgdfsrveq vladlknfsk eqlaqqaqkN EDFNTGKNSe lyqsvknsvn ktlvgnglsg ieatalaknf sdikkelnek fknFNNNNNG LKNSTEPIYA KVNKKKTGQV ASPEEPIytq vakkvnakid rlnqiaSGLG GVGQAAGFPL KRHDKVDDLS KVGLSASPEP IYATIDDLGG PFPLKRHDKV DDLSKVGrsr nqelaqkidn lnqavseaka gffgnleqti dklkdstkkn vmnlyvesak kVPASLSAKL DNYAInshtr iNSNIQNGAI NEKATGMLTQ KNPEWLklvn dkivAHNVGS VSLSEYDKIG FNQKNMKDYS DSFKfstkln navkdiksgf thflanafst gyyclarenA EHGIKNVNTK GGFQKS
>P55980_HOTLOOPS
1-19, 44-60, 70-87, 126-137, 202-210, 234-255, 412-420, 451-474, 492-503, 602-613, 622-657, 702-718, 730-740, 754-762, 767-791, 828-837, 883-897, 906-918, 1171-1186
MTNETIDQTR TPDQTQSQTa fdpqqfinnl qvafikvdnv vasFDPDQKP IVDKNDRDNR qafdgisqlR EEYSNKAIKN PTKKNQYfsd fidksndlin kdnlidvess tksfqkfgdq ryqifTSWVS HQKDPSKint rsirnfmeni iqppipddke kaeflksakq sfagiiignq irtdqkfmgv fdeslkerqe aEKNGGPTGG dwldiflsfi fnkkqssdvk eaiNQEPVPH VQPDIATTTT DIQGLppear dlldergnfs kftlgdmeml dvegvadidp nykfnqllih nnalssvlmg shngiepekv sllyagnggf gdkhdwnatv gykdqqgnnv atlinvhmkn gsglviagge kginnpsfyl ykedqltgsq ralsqeeirn kvdfmeflaq nNTKLDNLSE kekekfqnei edfqkdskay ldalgndria FVSKKDTKHS ALITEFNNGD LSYTlkdygk kadkaldrek nVTLQGSLKH DGVmfvdysn fkytnasknp nkgvgatngv shleagfnkv avfnlpdlnn laitsfvrrn lenkltakgl slqeanklik dflssnkela gkalnfnkav aEAKSTGNYD EVKkaqkdle kSLRKREHLE KEVEKKLESK SGNKNKMEAK AQANSQKdei falinkeanr daraiaytqn lkgikrelsd klekiskdlk dFSKSFDEFK NGKNKDFSka eetlkalkgS VKDLGINPEW iskvenlnaa lneFKNGKNK DFskvtQAKS DLENSVKDVI INQKVTDKVD Nlnqavsvak amgdfsrveq vladlknfsk eqlaqqaQKN EDFNTGKnse lyqsvknsvn ktlvgnglsg ieatalaknf sdikkelnek fkNFNNNNNG LKNSTEPiya kvnkkKTGQV ASPEEPIYtq vakkvnakid rlnqiasglg gvgqaagfpl krhdkvddls kvglsaspep iyatiddlgg pfplkrhdkv ddlskvgrsr nqelaqkidn lnqavseaka gffgnleqti dklkdstkkn vmnlyvesak kvpaslsakl dnyainshtr insniqngai nekatgmltq knpewlklvn dkivahnvgs vslseydkig fnqknmkdys dsfkfstkln navkdiksgf thflanafst gyyclarena EHGIKNVNTK GGFQKS
>P55980_REM465
1-18, 198-205, 627-639, 644-655, 905-912
MTNETIDQTR TPDQTQSQta fdpqqfinnl qvafikvdnv vasfdpdqkp ivdkndrdnr qafdgisqlr eeysnkaikn ptkknqyfsd fidksndlin kdnlidvess tksfqkfgdq ryqiftswvs hqkdpskint rsirnfmeni iqppipddke kaeflksakq sfagiiignq irtdqkfmgv fdeslkeRQE AEKNGgptgg dwldiflsfi fnkkqssdvk eainqepvph vqpdiatttt diqglppear dlldergnfs kftlgdmeml dvegvadidp nykfnqllih nnalssvlmg shngiepekv sllyagnggf gdkhdwnatv gykdqqgnnv atlinvhmkn gsglviagge kginnpsfyl ykedqltgsq ralsqeeirn kvdfmeflaq nntkldnlse kekekfqnei edfqkdskay ldalgndria fvskkdtkhs alitefnngd lsytlkdygk kadkaldrek nvtlqgslkh dgvmfvdysn fkytnasknp nkgvgatngv shleagfnkv avfnlpdlnn laitsfvrrn lenkltakgl slqeanklik dflssnkela gkalnfnkav aeakstgnyd evkkaqkdle kslrkrEHLE KEVEKKLESk sgnKNKMEAK AQANSqkdei falinkeanr daraiaytqn lkgikrelsd klekiskdlk dfsksfdefk ngknkdfska eetlkalkgs vkdlginpew iskvenlnaa lnefkngknk dfskvtqaks dlensvkdvi inqkvtdkvd nlnqavsvak amgdfsrveq vladlknfsk eqlaqqaqkn edfntgknse lyqsvknsvn ktlvgnglsg ieatalaknf sdikkelnek fknfnnnnng lknstepiya kvnkKKTGQV ASpeepiytq vakkvnakid rlnqiasglg gvgqaagfpl krhdkvddls kvglsaspep iyatiddlgg pfplkrhdkv ddlskvgrsr nqelaqkidn lnqavseaka gffgnleqti dklkdstkkn vmnlyvesak kvpaslsakl dnyainshtr insniqngai nekatgmltq knpewlklvn dkivahnvgs vslseydkig fnqknmkdys dsfkfstkln navkdiksgf thflanafst gyyclarena ehgiknvntk ggfqks
| JOB-ID | P55980_031802Zvd1an8AAQEAAALBfH4AAAAL |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P55980 |
| Description | sp|P55980|CAGA_HELPY Cytotoxicity-associated immunodominant antigen OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962 GN=cagA PE=1 SV=1 |
| Title/ID | none |
| Sequence length | 1186 |
| Download predictions | smoothed scores raw scores |