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>Q66972_LOOPS
1-81, 92-105, 114-122, 127-145, 159-184, 200-216, 240-260, 267-337, 343-350, 368-409, 420-427, 439-447, 470-478, 486-500, 537-552, 557-571, 587-601, 645-652, 688-702, 715-726, 737-787, 821-843, 855-874, 883-915, 954-970, 979-993, 1011-1018, 1029-1041, 1074-1124
KEFGKLEGGA SCSPSESSAA SSNAICTSNG GETIGFVNYN KVGTTTTLEK RPEILIFVNG YPIKFLLDTG ADITILNRRD Fqvknsieng rQNMIGVGGG KRGTNyinvh leiRDENYKT QCifgnVCVL EDNSLIQPLL GRDNMikfni rlvmaqisDK IPVVKVKMKD PNKGPQIKQW PLTNekieal teiverlerE GKVKRADPNN PWNTPVfaik kksgkwrmli dfrelnkltE KGAEVQLGLP HPAGLQIKKQ vtvldiGDAY FTIPLDPDYS PYTAFTLPRK NNAGPGRRFV WCSLPQGWIL SPLIYQSTLD NIIQPFIRQN PQLDIYQymd diYIGSNLSK kehkekveel rklllwwGFE TPEDKLQEEP PYTWMGYELH PLTWTIQQKQ LDIPEQPTLn elqklagkiN WASQAIPdls ikaltnmmRG NQNLNSTrqw tkearlevqk akkaieeqvQ LGYYDPSKel yaklsLVGPH QISYQVYQKD pekilwygkm srqkkkaent cdialracyk ireesiIRIG KEPRYEIPTS REawesNLIN SPYLKAPPPE Veyihaalni kralsmIKDA PIPGAETWYI Dggrklgkaa kaaywtdtgk wkvmelegsn qkaeiqalll alkaGSEEMN IItdsqyvin iilqqpdmme giwqevleel ekktaifIDW VPGHKGIPGN EEvdklcqtm miieGDGILD KRSEDAgydl laakeiHLLP GEVKVIPTGV KLMLPKGHWG LIIGKSSIGS KGLDVLGGVI DEGYRGEigv iminvsrksi tlmerqkiaq liilpckhev LEQGKVVMDS ERGDNGYGST GVFsswvdri eeaeLNHEKF HSDPQYLRTE FNLPkmvaee irRKCPVCRI RGEQVGGQLK IGPGIWQMDC TYFDGkiilv gihvesgyiw aqiisqetad ctvkavlqll sahNVTELQT DNGPNFKNQK megvlnymGV KHKFGIPGNP QSQalvenvn htlkvwiqkf LPETTSLDna lslavhslNF KRRGRIGGMA Pyellaqqes lriqdyfsai pqklqaqwiy ykdQKDKKWK GPMRVEYWGQ GSVLLKDEEK GYFLIPRRHI RRVPEPCALP EGDE
>Q66972_HOTLOOPS
1-19, 29-37, 45-54, 82-103, 166-186, 199-227, 512-522, 531-552, 689-697, 764-772, 828-839, 857-868, 893-905, 955-966, 1089-1097, 1103-1124
KEFGKLEGGA SCSPSESSAa ssnaictsNG GETIGFVnyn kvgtTTTLEK RPEIlifvng ypikflldtg aditilnrrd fQVKNSIENG RQNMIGVGGG KRGtnyinvh leirdenykt qcifgnvcvl ednsliqpll grdnmikfni rlvmaqisdk ipvvkVKMKD PNKGPQIKQW PLTNEKieal teiverleRE GKVKRADPNN PWNTPVFAIK KKSGKWRmli dfrelnklte kgaevqlglp hpaglqikkq vtvldigday ftipldpdys pytaftlprk nnagpgrrfv wcslpqgwil spliyqstld niiqpfirqn pqldiyqymd diyigsnlsk kehkekveel rklllwwgfe tpedklqeep pytwmgyelh pltwtiqqkq ldipeqptln elqklagkin wasqaipdls ikaltnmmrg nqnlnstrqw tkearlevqk akkaieeqvq lgyydpskel yaklslvgph qisyqvyqkd pekilwygkm sRQKKKAENT CDialracyk IREESIIRIG KEPRYEIPTS REawesnlin spylkapppe veyihaalni kralsmikda pipgaetwyi dggrklgkaa kaaywtdtgk wkvmelegsn qkaeiqalll alkagseemn iitdsqyvin iilqqpdmme giwqevleel ekktaifiDW VPGHKGIpgn eevdklcqtm miiegdgild krsedagydl laakeihllp gevkviptgv klmlpkghwg liiGKSSIGS KGldvlggvi degyrgeigv iminvsrksi tlmerqkiaq liilpckhev leqgkvvMDS ERGDNGYGSt gvfsswvdri eeaelnHEKF HSDPQYLRte fnlpkmvaee irrkcpvcri rgEQVGGQLK IGPGIwqmdc tyfdgkiilv gihvesgyiw aqiisqetad ctvkavlqll sahnVTELQT DNGPNFknqk megvlnymgv khkfgipgnp qsqalvenvn htlkvwiqkf lpettsldna lslavhslnf krrgriggma pyellaqqes lriqdyfsai pqklqaqwiy ykdqkdkkwk gpmrveywGQ GSVLLKDeek gyFLIPRRHI RRVPEPCALP EGDE
>Q66972_REM465
1-23
KEFGKLEGGA SCSPSESSAA SSNaictsng getigfvnyn kvgttttlek rpeilifvng ypikflldtg aditilnrrd fqvknsieng rqnmigvggg krgtnyinvh leirdenykt qcifgnvcvl ednsliqpll grdnmikfni rlvmaqisdk ipvvkvkmkd pnkgpqikqw pltnekieal teiverlere gkvkradpnn pwntpvfaik kksgkwrmli dfrelnklte kgaevqlglp hpaglqikkq vtvldigday ftipldpdys pytaftlprk nnagpgrrfv wcslpqgwil spliyqstld niiqpfirqn pqldiyqymd diyigsnlsk kehkekveel rklllwwgfe tpedklqeep pytwmgyelh pltwtiqqkq ldipeqptln elqklagkin wasqaipdls ikaltnmmrg nqnlnstrqw tkearlevqk akkaieeqvq lgyydpskel yaklslvgph qisyqvyqkd pekilwygkm srqkkkaent cdialracyk ireesiirig kepryeipts reawesnlin spylkapppe veyihaalni kralsmikda pipgaetwyi dggrklgkaa kaaywtdtgk wkvmelegsn qkaeiqalll alkagseemn iitdsqyvin iilqqpdmme giwqevleel ekktaifidw vpghkgipgn eevdklcqtm miiegdgild krsedagydl laakeihllp gevkviptgv klmlpkghwg liigkssigs kgldvlggvi degyrgeigv iminvsrksi tlmerqkiaq liilpckhev leqgkvvmds ergdngygst gvfsswvdri eeaelnhekf hsdpqylrte fnlpkmvaee irrkcpvcri rgeqvggqlk igpgiwqmdc tyfdgkiilv gihvesgyiw aqiisqetad ctvkavlqll sahnvtelqt dngpnfknqk megvlnymgv khkfgipgnp qsqalvenvn htlkvwiqkf lpettsldna lslavhslnf krrgriggma pyellaqqes lriqdyfsai pqklqaqwiy ykdqkdkkwk gpmrveywgq gsvllkdeek gyfliprrhi rrvpepcalp egde
| JOB-ID | Q66972_052235ZzgsG38AAQEAAGkXN1cAAABS |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | Q66972 |
| Description | tr|Q66972|Q66972_9RETR Pol polyprotein OS=Feline immunodeficiency virus OX=11673 GN=POL PE=1 SV=1 |
| Title/ID | none |
| Sequence length | 1124 |
| Download predictions | smoothed scores raw scores |