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>Q6QDR1_LOOPS
1-18, 28-92, 125-137, 144-187, 197-213, 225-285, 292-302, 314-326, 341-386, 415-439, 450-473, 484-494, 512-549, 557-585, 595-605, 621-632, 657-685, 693-731, 745-767, 805-937, 946-982, 995-1037, 1052-1060, 1092-1139, 1145-1215, 1238-1260, 1271-1293, 1308-1350, 1390-1421, 1429-1465, 1478-1489, 1510-1582, 1606-1647, 1703-1716, 1751-1782, 1793-1842, 1851-1898, 1904-1915, 1922-1989, 2008-2016, 2109-2142, 2163-2171, 2183-2199, 2209-2228, 2273-2282, 2288-2306, 2322-2360, 2383-2454, 2494-2503
MSGILDRCTC TPNARVFMae gqvyctrCLS ARSLLPLNLQ VPELGVLGLF YRPEEPLRWT LPRAFPTVEC SPAGACWLSA IFPIARMTSG NLnfqqrmvr vaaeiyragq ltpavlkalq vyerGCRWYP IVGPVPGvav fanSLHVSDK PFPGATHVLT NLPLPQRPKP EDFCPFECAM ADVYDIGhga vmyvakGKVS WAPRGGDEAK FETvprelkl ianqLHISFP PHHAVDMSKF VFIAPGSGVS MRVECPHGCL PANTVPEGNC WWRLFDSLPL DVQNKeirra nQFGYQTKHG VAgkylqrrl qanGLRAVTD TDGPIVvqyf svreswirhf RLAEEPSLPG FEDLLRIRVE PNTSPLSDKG GKIFRFGSHK WYGAGKrark arsgmtttva hralpareiq qakkHEDAGA DKAVHLRHYS PPADGNCGWh cisaianrmV NSKFETTLPE RVRPSDDWAT DEDlvntiqi lklPAALDRN GACVgakyvl klegehwtvs vTLGMSPSLL PLECVQGCCE HKSGLGPPDA VEVFGFDPAc ldrlaeVMHL PSSVIPAALA EMSGDPNCPA SPVTTvwtvs qffaRHRGGE HPDQVrlgki islcqvveec CCHQNKTNRA TPeevaarid qylhgatsle eclirlERVC PPSAADTFFD WNVVLPGVGA STQTTkqlhv nqCRALVPVV TQEPLDKDSV PLTAFSLSNC YYPAQGDEVR Hrerlnsvls klegVVREEY GLTPTEPGPR PALPNGLvel kdqmeedllk lvnaqatsem mawaaeqvdl kawvKNYPRW TPPPPPPRVQ PRKTKSVKSL PGNKPVPAPR RKVRSDCGSP ILMGDNVPDG REDLTVGGPL DLSTPSEPMT PLSEPALMPA LQYISRPVTS LSVLAPVPAP RRTVSRPVTP LSEPIFVSAP RHKFQQVeea nlaatTLTHQ DEPLDLSASS QTEYEASPLT PLQNMGILEV GGqeaeevls eisdTLNDIN PAPVSSSSSL SSVKITRPKH SAQAIIDSGG PCSGHLRrek eaclsimrea cDAAKLSDPA tqewlsrmwd rvdmltwrnt sayqafrild gRFEFLPKMI LETPPPYPCG FVMLPHTPAP SVGAESDLTI GSVATEDVPr ilgkIENAGE MPNQGLLTSF GEEPVCDQPV KDSWMSSRGF DESTTAPSAG TGGADLPTDL PPSDGLDADE WGPLRtvrkk aerlfdqlsr qvfnlvsHLP VFFSHLFKSD SGYSPGDWGF aaftlfclfl CYSYPFFGFV PLLGVFSGSS RRVrmgvfgc wlafavgLFK PVSDPVGTAC EFDSPECRNV LHSFELLKPW DPVRSLVVGP vglglailgr llggaryiwh fllrlgivad cilagayvlS QGRCKKCWGS CVRTAPNEIA FNVFPFTRAT RsslidlcDR FCAPKGMDPI FLATGWRGCW TGRSPIEQPS EKPIAfaqld ekritarTVV AQPYDPNQAv kclrvlqagg aivaeavpkV VKVSAIPFRA PFFPTGVKVD PECRIVVDPD TFTTALRSGY STTNLVLGVG DFAQLNGLKI RQISKPSGGG PHliaalhva csmalhmlag vyvtaVGSCG TGTNDPWCTN PFAVPGYGPG SLCTSRLCIS QHGLTLPlta lvagfglqei alvvlifvsi ggmahrlsck admlcvllai asyvwvpltw llCVFPCWLR WFSLHPltil wlvfflmsvn mpsgiltvvl lvalwllgry TNVVGLVTPY DIHHYTNGPR GVAALATAPD GTylaavrra alTGRTVLFT PSQLGSLLEG AFRTRKPSLN TVNVVGSSMG SGGVFTIDGK IKcvtaahvl TGNSARVSGV GFNQMLDFDV KGDFAIADCP NWQGAAPKTQ FCEDGWTGra ywlTSSGVEP GVIGNgfafc fTACGDSGSP VITEAGELVG VHTGSNKQGG GIVTRPSGQF CNVAPIKLSE LSEFFAGPKV PLGDVKVGSh iikdicevps dlcallaAKP ELEGGLstvq llcvffllwr mmghawtplv avgffilnev lpavlvrsvf sfgmfvlswl tpwsaqvlmi rlltaalnrn rlslafyslg aatgfvadLA ATQGHPLQAV MNLSTYAFLP RIMVVTSPVP VIacgvvhll aiilylfkyr clHNVLVGDG Afsaafflry faEGKLREGV SQSCGMNHEs ltgalamrLN DEDLDFLTKW TDFKCFVSas nmrnaagqfi eaayakalri elaqlvqvdk vrgtlaklea faDTVAPQLS PGdivvaLGH TPVGGIFDLK VGSTKHtlqa ietrvlagsk mTVARVVDPT PTPPPAPVPI PLPPKVLENG PNAWGDEDRL nkkkrrrmea vgifvmggkk yqKFWDKNSG DVFYEEVHDN TDAWECLRVD NPADFDPEKG TLCGHTTIED KTYSVYASPS GKKFLVPVYP ESKKnqweaa klsveqalgm mnvdgeltak eveklkriid klqGLTKEQC LNC
>Q6QDR1_HOTLOOPS
1-13, 289-303, 315-325, 343-352, 361-407, 457-472, 482-491, 625-634, 748-763, 810-861, 907-921, 997-1013, 1023-1035, 1052-1060, 1184-1196, 1479-1488, 1519-1534, 1795-1821, 2342-2364, 2373-2383, 2491-2503
MSGILDRCTC TPNarvfmae gqvyctrcls arsllplnlq vpelgvlglf yrpeeplrwt lprafptvec spagacwlsa ifpiarmtsg nlnfqqrmvr vaaeiyragq ltpavlkalq vyergcrwyp ivgpvpgvav fanslhvsdk pfpgathvlt nlplpqrpkp edfcpfecam advydighga vmyvakgkvs waprggdeak fetvprelkl ianqlhisfp phhavdmskf vfiapgsgvs mrvecphgcl pantvpegnc wwrlfdslpl dvqnkeirRA NQFGYQTKHG VAGkylqrrl qangLRAVTD TDGPIvvqyf svreswirhf rlAEEPSLPG FEdllrirve PNTSPLSDKG GKIFRFGSHK WYGAGKRARK ARSGMTTTVA HRALPAReiq qakkhedaga dkavhlrhys ppadgncgwh cisaianrmv nskfetTLPE RVRPSDDWAT DEdlvntiqi lKLPAALDRN Gacvgakyvl klegehwtvs vtlgmspsll plecvqgcce hksglgppda vevfgfdpac ldrlaevmhl pssvipaala emsgdpncpa spvttvwtvs qffarhrgge hpdqvrlgki islcqvveec cchqNKTNRA TPEEvaarid qylhgatsle eclirlervc ppsaadtffd wnvvlpgvga stqttkqlhv nqcralvpvv tqepldkdsv pltafslsnc yypaqgdevr hrerlnsvls klegvvrEEY GLTPTEPGPR PALpnglvel kdqmeedllk lvnaqatsem mawaaeqvdl kawvknyprW TPPPPPPRVQ PRKTKSVKSL PGNKPVPAPR RKVRSDCGSP ILMGDNVPDG Redltvggpl dlstpsepmt plsepalmpa lqyisrpvts lsvlapVPAP RRTVSRPVTP Lsepifvsap rhkfqqveea nlaattlthq depldlsass qteyeasplt plqnmgilev ggqeaeevls eisdtlNDIN PAPVSSSSSL SSVkitrpkh saQAIIDSGG PCSGHlrrek eaclsimrea cDAAKLSDPA tqewlsrmwd rvdmltwrnt sayqafrild grfeflpkmi letpppypcg fvmlphtpap svgaesdlti gsvatedvpr ilgkienage mpnqglltsf geepvcdqpv kdswmssrgf desTTAPSAG TGGADLptdl ppsdgldade wgplrtvrkk aerlfdqlsr qvfnlvshlp vffshlfksd sgyspgdwgf aaftlfclfl cysypffgfv pllgvfsgss rrvrmgvfgc wlafavglfk pvsdpvgtac efdspecrnv lhsfellkpw dpvrslvvgp vglglailgr llggaryiwh fllrlgivad cilagayvls qgrckkcwgs cvrtapneia fnvfpftrat rsslidlcdr fcapkgmdpi flatgwrgcw tgrspieqps ekpiafaqld ekritartVV AQPYDPNQav kclrvlqagg aivaeavpkv vkvsaipfRA PFFPTGVKVD PECRivvdpd tfttalrsgy sttnlvlgvg dfaqlnglki rqiskpsggg phliaalhva csmalhmlag vyvtavgscg tgtndpwctn pfavpgygpg slctsrlcis qhgltlplta lvagfglqei alvvlifvsi ggmahrlsck admlcvllai asyvwvpltw llcvfpcwlr wfslhpltil wlvfflmsvn mpsgiltvvl lvalwllgry tnvvglvtpy dihhytngpr gvaalatapd gtylaavrra altgRTVLFT PSQLGSLLEG AFRTRKPSLN Tvnvvgssmg sggvftidgk ikcvtaahvl tgnsarvsgv gfnqmldfdv kgdfaiadcp nwqgaapktq fcedgwtgra ywltssgvep gvigngfafc ftacgdsgsp viteagelvg vhtgsnkqgg givtrpsgqf cnvapiklse lseffagpkv plgdvkvgsh iikdicevps dlcallaakp elegglstvq llcvffllwr mmghawtplv avgffilnev lpavlvrsvf sfgmfvlswl tpwsaqvlmi rlltaalnrn rlslafyslg aatgfvadla atqghplqav mnlstyaflp rimvvtspvp viacgvvhll aiilylfkyr clhnvlvgdg afsaafflry faegklregv sqscgmnhes ltgalamrln dedldfltkw tdfkcfvsas nmrnaagqfi eaayakalri elaqlvqvdk vrgtlaklea fadtvapqls pgdivvalgh tpvggifdlk vgstkhtlqa ietrvlagsk mtvarvvdpt ptpppapvpi pLPPKVLENG PNAWGDEDRL NKKKrrrmea vgIFVMGGKK YQKfwdknsg dvfyeevhdn tdaweclrvd npadfdpekg tlcghttied ktysvyasps gkkflvpvyp eskknqweaa klsveqalgm mnvdgeltak eveklkriid KLQGLTKEQC LNC
>Q6QDR1_REM465
384-398, 411-420, 814-843, 1002-1021
msgildrctc tpnarvfmae gqvyctrcls arsllplnlq vpelgvlglf yrpeeplrwt lprafptvec spagacwlsa ifpiarmtsg nlnfqqrmvr vaaeiyragq ltpavlkalq vyergcrwyp ivgpvpgvav fanslhvsdk pfpgathvlt nlplpqrpkp edfcpfecam advydighga vmyvakgkvs waprggdeak fetvprelkl ianqlhisfp phhavdmskf vfiapgsgvs mrvecphgcl pantvpegnc wwrlfdslpl dvqnkeirra nqfgyqtkhg vagkylqrrl qanglravtd tdgpivvqyf svreswirhf rlaeepslpg fedllrirve pntsplsdkg gkifrfgshk wygAGKRARK ARSGMTTTva hralpareiq QAKKHEDAGA dkavhlrhys ppadgncgwh cisaianrmv nskfettlpe rvrpsddwat dedlvntiqi lklpaaldrn gacvgakyvl klegehwtvs vtlgmspsll plecvqgcce hksglgppda vevfgfdpac ldrlaevmhl pssvipaala emsgdpncpa spvttvwtvs qffarhrgge hpdqvrlgki islcqvveec cchqnktnra tpeevaarid qylhgatsle eclirlervc ppsaadtffd wnvvlpgvga stqttkqlhv nqcralvpvv tqepldkdsv pltafslsnc yypaqgdevr hrerlnsvls klegvvreey gltptepgpr palpnglvel kdqmeedllk lvnaqatsem mawaaeqvdl kawvknyprw tppPPPPRVQ PRKTKSVKSL PGNKPVPAPR RKVrsdcgsp ilmgdnvpdg redltvggpl dlstpsepmt plsepalmpa lqyisrpvts lsvlapvpap rrtvsrpvtp lsepifvsap rhkfqqveea nlaattlthq depldlsass qteyeasplt plqnmgilev ggqeaeevls eisdtlndin pAPVSSSSSL SSVKITRPKH Saqaiidsgg pcsghlrrek eaclsimrea cdaaklsdpa tqewlsrmwd rvdmltwrnt sayqafrild grfeflpkmi letpppypcg fvmlphtpap svgaesdlti gsvatedvpr ilgkienage mpnqglltsf geepvcdqpv kdswmssrgf desttapsag tggadlptdl ppsdgldade wgplrtvrkk aerlfdqlsr qvfnlvshlp vffshlfksd sgyspgdwgf aaftlfclfl cysypffgfv pllgvfsgss rrvrmgvfgc wlafavglfk pvsdpvgtac efdspecrnv lhsfellkpw dpvrslvvgp vglglailgr llggaryiwh fllrlgivad cilagayvls qgrckkcwgs cvrtapneia fnvfpftrat rsslidlcdr fcapkgmdpi flatgwrgcw tgrspieqps ekpiafaqld ekritartvv aqpydpnqav kclrvlqagg aivaeavpkv vkvsaipfra pffptgvkvd pecrivvdpd tfttalrsgy sttnlvlgvg dfaqlnglki rqiskpsggg phliaalhva csmalhmlag vyvtavgscg tgtndpwctn pfavpgygpg slctsrlcis qhgltlplta lvagfglqei alvvlifvsi ggmahrlsck admlcvllai asyvwvpltw llcvfpcwlr wfslhpltil wlvfflmsvn mpsgiltvvl lvalwllgry tnvvglvtpy dihhytngpr gvaalatapd gtylaavrra altgrtvlft psqlgslleg afrtrkpsln tvnvvgssmg sggvftidgk ikcvtaahvl tgnsarvsgv gfnqmldfdv kgdfaiadcp nwqgaapktq fcedgwtgra ywltssgvep gvigngfafc ftacgdsgsp viteagelvg vhtgsnkqgg givtrpsgqf cnvapiklse lseffagpkv plgdvkvgsh iikdicevps dlcallaakp elegglstvq llcvffllwr mmghawtplv avgffilnev lpavlvrsvf sfgmfvlswl tpwsaqvlmi rlltaalnrn rlslafyslg aatgfvadla atqghplqav mnlstyaflp rimvvtspvp viacgvvhll aiilylfkyr clhnvlvgdg afsaafflry faegklregv sqscgmnhes ltgalamrln dedldfltkw tdfkcfvsas nmrnaagqfi eaayakalri elaqlvqvdk vrgtlaklea fadtvapqls pgdivvalgh tpvggifdlk vgstkhtlqa ietrvlagsk mtvarvvdpt ptpppapvpi plppkvleng pnawgdedrl nkkkrrrmea vgifvmggkk yqkfwdknsg dvfyeevhdn tdaweclrvd npadfdpekg tlcghttied ktysvyasps gkkflvpvyp eskknqweaa klsveqalgm mnvdgeltak eveklkriid klqgltkeqc lnc
| JOB-ID | Q6QDR1_220703Zz@vB38AAQEAAGD1544AAABS |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | Q6QDR1 |
| Description | tr|Q6QDR1|Q6QDR1_PRRSV Nonstructural proteins ORF1a OS=Porcine reproductive and respiratory syndrome virus OX=28344 PE=1 SV=1 |
| Title/ID | none |
| Sequence length | 2503 |
| Download predictions | smoothed scores raw scores |