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>P03366_LOOPS
1-30, 43-54, 64-72, 119-149, 162-183, 210-239, 249-260, 275-294, 349-358, 381-424, 446-513, 524-551, 569-585, 592-626, 642-672, 688-758, 767-777, 785-795, 812-853, 864-873, 886-896, 908-921, 944-962, 981-995, 1008-1021, 1029-1074, 1087-1098, 1105-1113, 1135-1145, 1181-1190, 1202-1227, 1241-1254, 1264-1281, 1293-1308, 1344-1355, 1386-1421, 1431-1447
MGARASVLSG GELDRWEKIR LRPGGKKKYK lkhivwasre leRFAVNPGL LETSegcrqi lgqLQPSLQT GSeelrslyn tvatlycvhq rieikdtkea ldkieeeqnk skkkaqqaAA DTGHSSQVSQ NYPIVQNIQG QMVHQAISPr tlnawvkvve eKAFSPEVIP MFSALSEGAT PQDlntmlnt vgghqaamqm lketineeaA EWDRVHPVHA GPIAPGQMRE PRGSDIAGTt stlqeqigWM TNNPPIPVGE iykrwiilgl nkivRMYSPT SILDIRQGPK EPFRdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtAC QGVGGPGHka rvlaeamsqv tntatimmqr GNFRNQRKMV KCFNCGKEGH TARNCRAPRK KGCWKCGKEG HQMKdcterq anflredlaf lqgkaREFSS EQTRANSPTI SSEQTRANSP TRRELQVWGR DNNSPSEAGA DRQGTVSFNF PQITLWQRPL VTIkiggqlk ealLDTGADD TVLEEMSLPG RWKPKMIGGI Ggfikvrqyd qilieicgHK AIGTVLVGPT PVNIIgrnll tQIGCTLNFP ISPIETVPVK LKPGMDGPKV KQWPLTeeki kalveictem eKEGKISKIG PENPYNTPVF AIKKKDSTKW RKlvdfreln krtqdfwEVQ LGIPHPAGLK KKKSVTVLDV GDAYFSVPLD EDFRKYTAFT IPSINNETPG IRYQYNVLPQ GWKGSPAIfq ssmtkiLEPF KKQNPDIviy qymdDLYVGS DLEIGqhrtk ieelrqhllr wGLTTPDKKH QKEPPFLWMG YELHPDKWTV QPIVLPEKDS WTVndiqklv gklNWASQIY PGIkvrqlck llrgtKALTE VIPLTEeael elaenreILK EPVHGVYYDP Skdliaeiqk qgqgqwtyqi yqePFKNLKT GKYARMRGAH TNdvkqltea vqkittesiv IWGKTPKFKL PIQKEtwetw wteywqaTWI PEWEFVNTPP LvklwyqlEK EPIVGAETFY VDGAANRETK LGKAGYVTNK GRQKVVPLTN TTNQktelqa iylalqDSGL EVNIVTDSqy algiIQAQPD KSEselvnqi ieqlikkekv ylawVPAHKG IGGNEqvdkl vsagirkilf ldgidkaqde hekyhsnwra MASDFNLPPV vakeivascd kCQLKGEAMH GQVDCSPGIW QLDCTHLegk vilvavhvas GYIEAEVIPA ETGQetayfl lklAGRWPVK TIHTDNGSNF Tsatvkaacw waGIKQEFGI PYNPQSQGvv esmnkelkki igqvrdqaeh lktavqmavf ihnFKRKGGI GGYSAgeriv diiatdiqtk elqkqitkiq nfrvyYRDSR NPLWKGPAKL LWKGEGAVVI QDNSDIKVVP Rrkakiirdy GKQMAGDDCV ASRQDED
>P03366_HOTLOOPS
1-32, 121-129, 280-292, 397-411, 446-495, 534-547, 606-627, 642-671, 681-705, 730-740, 812-823, 863-871, 886-898, 977-993, 1046-1075, 1272-1281, 1403-1422, 1428-1447
MGARASVLSG GELDRWEKIR LRPGGKKKYK LKhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tvatlycvhq rieikdtkea ldkieeeqnk skkkaqqaaa DTGHSSQVSq nypivqniqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrvhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspT SILDIRQGPK EPfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tntatimmqr gnfrnqrkmv kcfncgKEGH TARNCRAPRK Kgcwkcgkeg hqmkdcterq anflredlaf lqgkaREFSS EQTRANSPTI SSEQTRANSP TRRELQVWGR DNNSPSEAGA DRQGTvsfnf pqitlwqrpl vtikiggqlk ealldtgadd tvlEEMSLPG RWKPKMIggi ggfikvrqyd qilieicghk aigtvlvgpt pvniigrnll tqigctlnfp ispieTVPVK LKPGMDGPKV KQWPLTEeki kalveictem eKEGKISKIG PENPYNTPVF AIKKKDSTKW Rklvdfreln KRTQDFWEVQ LGIPHPAGLK KKKSVtvldv gdayfsvpld edfrkytafT IPSINNETPG iryqynvlpq gwkgspaifq ssmtkilepf kkqnpdiviy qymddlyvgs dleigqhrtk ieelrqhllr wGLTTPDKKH QKEppflwmg yelhpdkwtv qpivlpekds wtvndiqklv gkLNWASQIY Pgikvrqlck llrgtKALTE VIPLTEEAel elaenreilk epvhgvyydp skdliaeiqk qgqgqwtyqi yqepfknlkt gkyarmrgah tndvkqltea vqkittESIV IWGKTPKFKL PIQketwetw wteywqatwi pewefvntpp lvklwyqlek epivgaetfy vdgaaNRETK LGKAGYVTNK GRQKVVPLTN TTNQKtelqa iylalqdsgl evnivtdsqy algiiqaqpd kseselvnqi ieqlikkekv ylawvpahkg iggneqvdkl vsagirkilf ldgidkaqde hekyhsnwra masdfnlppv vakeivascd kcqlkgeamh gqvdcspgiw qldcthlegk vilvavhvas gyieaevipa etgqetayfl lklagrwpvk tIHTDNGSNF Tsatvkaacw wagikqefgi pynpqsqgvv esmnkelkki igqvrdqaeh lktavqmavf ihnfkrkggi ggysageriv diiatdiqtk elqkqitkiq nfrvyyrdsr nplwkgpakl lwKGEGAVVI QDNSDIKVVP RRkakiiRDY GKQMAGDDCV ASRQDED
>P03366_REM465
1-9, 106-128, 447-491, 1370-1378, 1414-1447
MGARASVLSg geldrwekir lrpggkkkyk lkhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tvatlycvhq rieikdtkea ldkieEEQNK SKKKAQQAAA DTGHSSQVsq nypivqniqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrvhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspt sildirqgpk epfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tntatimmqr gnfrnqrkmv kcfncgkegh tarncraprk kgcwkcgkeg hqmkdcterq anflredlaf lqgkarEFSS EQTRANSPTI SSEQTRANSP TRRELQVWGR DNNSPSEAGA Drqgtvsfnf pqitlwqrpl vtikiggqlk ealldtgadd tvleemslpg rwkpkmiggi ggfikvrqyd qilieicghk aigtvlvgpt pvniigrnll tqigctlnfp ispietvpvk lkpgmdgpkv kqwplteeki kalveictem ekegkiskig penpyntpvf aikkkdstkw rklvdfreln krtqdfwevq lgiphpaglk kkksvtvldv gdayfsvpld edfrkytaft ipsinnetpg iryqynvlpq gwkgspaifq ssmtkilepf kkqnpdiviy qymddlyvgs dleigqhrtk ieelrqhllr wglttpdkkh qkeppflwmg yelhpdkwtv qpivlpekds wtvndiqklv gklnwasqiy pgikvrqlck llrgtkalte viplteeael elaenreilk epvhgvyydp skdliaeiqk qgqgqwtyqi yqepfknlkt gkyarmrgah tndvkqltea vqkittesiv iwgktpkfkl piqketwetw wteywqatwi pewefvntpp lvklwyqlek epivgaetfy vdgaanretk lgkagyvtnk grqkvvpltn ttnqktelqa iylalqdsgl evnivtdsqy algiiqaqpd kseselvnqi ieqlikkekv ylawvpahkg iggneqvdkl vsagirkilf ldgidkaqde hekyhsnwra masdfnlppv vakeivascd kcqlkgeamh gqvdcspgiw qldcthlegk vilvavhvas gyieaevipa etgqetayfl lklagrwpvk tihtdngsnf tsatvkaacw wagikqefgi pynpqsqgvv esmnkelkki igqvrdqaeh lktavqmavf ihnfkrkggi ggysageriv diiatdiqtK ELQKQITKiq nfrvyyrdsr nplwkgpakl lwkgegavvi qdnSDIKVVP RRKAKIIRDY GKQMAGDDCV ASRQDED
| JOB-ID | P03366_154137ZivLMX8AAQEAAHG6qskAAABT |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P03366 |
| Description | sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate BH10) OX=11678 GN=gag-pol PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 1447 |
| Download predictions | smoothed scores raw scores |