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>P03367_LOOPS
1-30, 43-54, 64-72, 119-149, 162-183, 210-239, 249-260, 275-294, 349-358, 390-424, 446-513, 524-551, 569-585, 592-626, 642-672, 688-758, 767-777, 785-795, 812-853, 864-873, 886-896, 908-921, 944-963, 981-995, 1008-1021, 1029-1066, 1087-1098, 1105-1113, 1135-1145, 1181-1190, 1202-1227, 1241-1254, 1264-1282, 1293-1308, 1344-1355, 1385-1421, 1431-1447
MGARASVLSG GELDRWEKIR LRPGGKKKYK lkhivwasre leRFAVNPGL LETSegcrqi lgqLQPSLQT GSeelrslyn tvatlycvhq rieikdtkea ldkieeeqnk skkkaqqaAA DTGHSSQVSQ NYPIVQNIQG QMVHQAISPr tlnawvkvve eKAFSPEVIP MFSALSEGAT PQDlntmlnt vgghqaamqm lketineeaA EWDRVHPVHA GPIAPGQMRE PRGSDIAGTt stlqeqigWM TNNPPIPVGE iykrwiilgl nkivRMYSPT SILDIRQGPK EPFRdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtAC QGVGGPGHka rvlaeamsqv tnsatimmqr gnfrnqrkiV KCFNCGKEGH IARNCRAPRK KGCWKCGKEG HQMKdcterq anflredlaf lqgkaREFSS EQTRANSPTI SSEQTRANSP TRRELQVWGR DNNSLSEAGA DRQGTVSFNF PQITLWQRPL VTIkiggqlk ealLDTGADD TVLEEMSLPG RWKPKMIGGI Ggfikvrqyd qilieicgHK AIGTVLVGPT PVNIIgrnll tQIGCTLNFP ISPIETVPVK LKPGMDGPKV KQWPLTeeki kalveictem eKEGKISKIG PENPYNTPVF AIKKKDSTKW RKlvdfreln krtqdfwEVQ LGIPHPAGLK KKKSVTVLDV GDAYFSVPLD EDFRKYTAFT IPSINNETPG IRYQYNVLPQ GWKGSPAIfq ssmtkiLEPF RKQNPDIviy qymdDLYVGS DLEIGqhrtk ieelrqhllr wGLTTPDKKH QKEPPFLWMG YELHPDKWTV QPIVLPEKDS WTVndiqklv gklNWASQIY PGIkvrqlck llrgtKALTE VIPLTEeael elaenreILK EPVHGVYYDP Skdliaeiqk qgqgqwtyqi yqePFKNLKT GKYARTRGAH TNDvkqltea vqkittesiv IWGKTPKFKL PIQKEtwetw wteywqaTWI PEWEFVNTPP LvklwyqlEK EPIVGAETFY VDGAASRETK LGKAGYVTNR GRQKVVtltd ttnqktelqa ihlalqDSGL EVNIVTDSqy algiIQAQPD KSEselvnqi ieqlikkekv ylawVPAHKG IGGNEqvdkl vsagirkvlf ldgidkaqde hekyhsnwra MASDFNLPPV vakeivascd kCQLKGEAMH GQVDCSPGIW QLDCTHLegk vilvavhvas GYIEAEVIPA ETGQetayfl lklAGRWPVK TIHTDNGSNF TSttvkaacw waGIKQEFGI PYNPQSQGvv esmnkelkki igqvrdqaeh lktavqmavf ihnFKRKGGI GGYSAgeriv diiatdiqtk elqkqitkiq nfrvYYRDSR DPLWKGPAKL LWKGEGAVVI QDNSDIKVVP Rrkakiirdy GKQMAGDDCV ASRQDED
>P03367_HOTLOOPS
1-32, 121-129, 280-292, 398-411, 446-479, 534-547, 606-627, 642-671, 681-705, 730-740, 812-823, 863-871, 886-898, 955-966, 976-993, 1040-1067, 1272-1282, 1402-1422, 1428-1447
MGARASVLSG GELDRWEKIR LRPGGKKKYK LKhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tvatlycvhq rieikdtkea ldkieeeqnk skkkaqqaaa DTGHSSQVSq nypivqniqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrvhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspT SILDIRQGPK EPfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tnsatimmqr gnfrnqrkiv kcfncgkEGH IARNCRAPRK Kgcwkcgkeg hqmkdcterq anflredlaf lqgkaREFSS EQTRANSPTI SSEQTRANSP TRRELQVWGr dnnslseaga drqgtvsfnf pqitlwqrpl vtikiggqlk ealldtgadd tvlEEMSLPG RWKPKMIggi ggfikvrqyd qilieicghk aigtvlvgpt pvniigrnll tqigctlnfp ispieTVPVK LKPGMDGPKV KQWPLTEeki kalveictem eKEGKISKIG PENPYNTPVF AIKKKDSTKW Rklvdfreln KRTQDFWEVQ LGIPHPAGLK KKKSVtvldv gdayfsvpld edfrkytafT IPSINNETPG iryqynvlpq gwkgspaifq ssmtkilepf rkqnpdiviy qymddlyvgs dleigqhrtk ieelrqhllr wGLTTPDKKH QKEppflwmg yelhpdkwtv qpivlpekds wtvndiqklv gkLNWASQIY Pgikvrqlck llrgtKALTE VIPLTEEAel elaenreilk epvhgvyydp skdliaeiqk qgqgqwtyqi yqepfknlkt gkyaRTRGAH TNDVKQltea vqkitTESIV IWGKTPKFKL PIQketwetw wteywqatwi pewefvntpp lvklwyqlek epivgaetfY VDGAASRETK LGKAGYVTNR GRQKVVTltd ttnqktelqa ihlalqdsgl evnivtdsqy algiiqaqpd kseselvnqi ieqlikkekv ylawvpahkg iggneqvdkl vsagirkvlf ldgidkaqde hekyhsnwra masdfnlppv vakeivascd kcqlkgeamh gqvdcspgiw qldcthlegk vilvavhvas gyieaevipa etgqetayfl lklagrwpvk tIHTDNGSNF TSttvkaacw wagikqefgi pynpqsqgvv esmnkelkki igqvrdqaeh lktavqmavf ihnfkrkggi ggysageriv diiatdiqtk elqkqitkiq nfrvyyrdsr dplwkgpakl lWKGEGAVVI QDNSDIKVVP RRkakiiRDY GKQMAGDDCV ASRQDED
>P03367_REM465
1-9, 106-128, 447-476, 1370-1379, 1414-1447
MGARASVLSg geldrwekir lrpggkkkyk lkhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tvatlycvhq rieikdtkea ldkieEEQNK SKKKAQQAAA DTGHSSQVsq nypivqniqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrvhpvha gpiapgqmre prgsdiagtt stlqeqigwm tnnppipvge iykrwiilgl nkivrmyspt sildirqgpk epfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpa atleemmtac qgvggpghka rvlaeamsqv tnsatimmqr gnfrnqrkiv kcfncgkegh iarncraprk kgcwkcgkeg hqmkdcterq anflredlaf lqgkarEFSS EQTRANSPTI SSEQTRANSP TRRELQvwgr dnnslseaga drqgtvsfnf pqitlwqrpl vtikiggqlk ealldtgadd tvleemslpg rwkpkmiggi ggfikvrqyd qilieicghk aigtvlvgpt pvniigrnll tqigctlnfp ispietvpvk lkpgmdgpkv kqwplteeki kalveictem ekegkiskig penpyntpvf aikkkdstkw rklvdfreln krtqdfwevq lgiphpaglk kkksvtvldv gdayfsvpld edfrkytaft ipsinnetpg iryqynvlpq gwkgspaifq ssmtkilepf rkqnpdiviy qymddlyvgs dleigqhrtk ieelrqhllr wglttpdkkh qkeppflwmg yelhpdkwtv qpivlpekds wtvndiqklv gklnwasqiy pgikvrqlck llrgtkalte viplteeael elaenreilk epvhgvyydp skdliaeiqk qgqgqwtyqi yqepfknlkt gkyartrgah tndvkqltea vqkittesiv iwgktpkfkl piqketwetw wteywqatwi pewefvntpp lvklwyqlek epivgaetfy vdgaasretk lgkagyvtnr grqkvvtltd ttnqktelqa ihlalqdsgl evnivtdsqy algiiqaqpd kseselvnqi ieqlikkekv ylawvpahkg iggneqvdkl vsagirkvlf ldgidkaqde hekyhsnwra masdfnlppv vakeivascd kcqlkgeamh gqvdcspgiw qldcthlegk vilvavhvas gyieaevipa etgqetayfl lklagrwpvk tihtdngsnf tsttvkaacw wagikqefgi pynpqsqgvv esmnkelkki igqvrdqaeh lktavqmavf ihnfkrkggi ggysageriv diiatdiqtK ELQKQITKIq nfrvyyrdsr dplwkgpakl lwkgegavvi qdnSDIKVVP RRKAKIIRDY GKQMAGDDCV ASRQDED
| JOB-ID | P03367_122726ZjTYLn8AAQEAABAkJCQAAABF |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P03367 |
| Description | sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) OX=11686 GN=gag-pol PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 1447 |
| Download predictions | smoothed scores raw scores |