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>P03369_LOOPS
1-30, 43-54, 64-72, 122-151, 164-185, 212-241, 251-262, 277-296, 351-360, 371-427, 448-503, 514-541, 546-575, 582-616, 632-662, 678-748, 757-767, 775-785, 801-843, 876-886, 898-911, 934-952, 971-983, 999-1011, 1019-1053, 1077-1088, 1095-1103, 1125-1135, 1171-1180, 1192-1217, 1231-1244, 1254-1272, 1283-1298, 1334-1345, 1375-1411, 1421-1437
MGARASVLSG GELDKWEKIR LRPGGKKKYK lkhivwasre leRFAVNPGL LETSegcrqi lgqLQPSLQT GSeelrslyn tvatlycvhq ridvkdtkea lekieeeqnk skkkaqqaaa aAGTGNSSQV SQNYPIVQNL QGQMVHQAIS Prtlnawvkv veeKAFSPEV IPMFSALSEG ATPQDlntml ntvgghqaam qmlketinee aAEWDRVHPV HAGPIAPGQM REPRGSDIAG Ttstlqeqig WMTNNPPIPV GEiykrwiil glnkivRMYS PTSILDIRQG PKEPFRdyvd rfyktlraeq asqdvknwmt etllvqnanp dcktilkalg paatleemmt ACQGVGGPGH karvlaeams QVTNPANIMM QRGNFRNQRK TVKCFNCGKE GHIAKNCRAP RKKGCWRCGR EGHQMKDcte rqanflredl aflqgkaREF SSEQTRANSP TRRELQVWGG ENNSLSEAGA DRQGTVSFNF PQITLWQRPL VTIriggqlk ealLDTGADD TVLEEMNLPG KWKPKMIGGI GgfikVRQYD QIPVEICGHK AIGTVLVGPT PVNIIgrnll tQIGCTLNFP ISPIETVPVK LKPGMDGPKV KQWPLTeeki kalveictem eKEGKISKIG PENPYNTPVF AIKKKDSTKW RKlvdfreln krtqdfwEVQ LGIPHPAGLK KKKSVTVLDV GDAYFSVPLD KDFRKYTAFT IPSINNETPG IRYQYNVLPQ GWKGSPAIfq ssmtkiLEPF RKQNPDIviy qymdDLYVGS DLEIGqhrtk ieelrqhllr WGFTTPDKKH QKEPPFLWMG YELHPDKWTV QPIMLPEKDS WTVndiqklv gklnwasqiy agikvkqlck llrgtKALTE VIPLTEeael elaenreILK EPVHEVYYDP Skdlvaeiqk qgqgqwtyqi yqePFKNLKT GKYARMRGAH TNdvkqltea vqkvstesiv IWGKIPKFKL PIQketweaw wmeywqatWI PEWEFVNTPP LvklwyqlEK EPIVGAETFY VDGAANRETK LGKAGYVTDR GRQkvvsiad ttnqktelqa ihlalqDSGL EVNIVTDSqy algiIQAQPD KSEselvsqi ieqlikkekv ylawVPAHKG IGGNEqvdkl vsagirkvlf lngidkaqee hekyhsnwra MASDFNLPPV vakeivascd kCQLKGEAMH GQVDCSPGIW QLDCTHLegk iilvavhvas GYIEAEVIPA ETGQetayfl lklAGRWPVK TIHTDNGSNF TSttvkaacw waGIKQEFGI PYNPQSQGvv esmnnelkki igqvrdqaeh lktavqmavf ihnFKRKGGI GGYSAgeriv diiatdiqtk elqkqitkiq nfrvYYRDNK DPLWKGPAKL LWKGEGAVVI QDNSDIKVVP Rrkakiirdy GKQMAGDDCV ASRQDED
>P03369_HOTLOOPS
1-31, 123-131, 282-294, 395-427, 448-469, 526-537, 596-617, 632-661, 671-697, 705-713, 720-731, 803-813, 877-888, 966-981, 1029-1053, 1262-1272, 1393-1412, 1418-1437
MGARASVLSG GELDKWEKIR LRPGGKKKYK Lkhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tvatlycvhq ridvkdtkea lekieeeqnk skkkaqqaaa aaGTGNSSQV Sqnypivqnl qgqmvhqais prtlnawvkv veekafspev ipmfsalseg atpqdlntml ntvgghqaam qmlketinee aaewdrvhpv hagpiapgqm reprgsdiag ttstlqeqig wmtnnppipv geiykrwiil glnkivrmys pTSILDIRQG PKEPfrdyvd rfyktlraeq asqdvknwmt etllvqnanp dcktilkalg paatleemmt acqgvggpgh karvlaeams qvtnpanimm qrgnfrnqrk tvkcFNCGKE GHIAKNCRAP RKKGCWRCGR EGHQMKDcte rqanflredl aflqgkaREF SSEQTRANSP TRRELQVWGg ennslseaga drqgtvsfnf pqitlwqrpl vtiriggqlk ealldtgadd tvleeMNLPG KWKPKMIggi ggfikvrqyd qipveicghk aigtvlvgpt pvniigrnll tqigctlnfp ispieTVPVK LKPGMDGPKV KQWPLTEeki kalveictem eKEGKISKIG PENPYNTPVF AIKKKDSTKW Rklvdfreln KRTQDFWEVQ LGIPHPAGLK KKKSVTVldv gdayFSVPLD KDFrkytafT IPSINNETPG Iryqynvlpq gwkgspaifq ssmtkilepf rkqnpdiviy qymddlyvgs dleigqhrtk ieelrqhllr wgFTTPDKKH QKEppflwmg yelhpdkwtv qpimlpekds wtvndiqklv gklnwasqiy agikvkqlck llrgtkALTE VIPLTEEAel elaenreilk epvhevyydp skdlvaeiqk qgqgqwtyqi yqepfknlkt gkyarmrgah tndvkqltea vqkvsTESIV IWGKIPKFKL Piqketweaw wmeywqatwi pewefvntpp lvklwyqlek epivgaetFY VDGAANRETK LGKAGYVTDR GRQkvvsiad ttnqktelqa ihlalqdsgl evnivtdsqy algiiqaqpd kseselvsqi ieqlikkekv ylawvpahkg iggneqvdkl vsagirkvlf lngidkaqee hekyhsnwra masdfnlppv vakeivascd kcqlkgeamh gqvdcspgiw qldcthlegk iilvavhvas gyieaevipa etgqetayfl lklagrwpvk tIHTDNGSNF TSttvkaacw wagikqefgi pynpqsqgvv esmnnelkki igqvrdqaeh lktavqmavf ihnfkrkggi ggysageriv diiatdiqtk elqkqitkiq nfrvyyrdnk dplwkgpakl lwKGEGAVVI QDNSDIKVVP RRkakiiRDY GKQMAGDDCV ASRQDED
>P03369_REM465
1-9, 106-129, 449-464, 1099-1107, 1360-1368, 1404-1437
MGARASVLSg geldkwekir lrpggkkkyk lkhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tvatlycvhq ridvkdtkea lekieEEQNK SKKKAQQAAA AAGTGNSSQv sqnypivqnl qgqmvhqais prtlnawvkv veekafspev ipmfsalseg atpqdlntml ntvgghqaam qmlketinee aaewdrvhpv hagpiapgqm reprgsdiag ttstlqeqig wmtnnppipv geiykrwiil glnkivrmys ptsildirqg pkepfrdyvd rfyktlraeq asqdvknwmt etllvqnanp dcktilkalg paatleemmt acqgvggpgh karvlaeams qvtnpanimm qrgnfrnqrk tvkcfncgke ghiakncrap rkkgcwrcgr eghqmkdcte rqanflredl aflqgkarEF SSEQTRANSP TRRElqvwgg ennslseaga drqgtvsfnf pqitlwqrpl vtiriggqlk ealldtgadd tvleemnlpg kwkpkmiggi ggfikvrqyd qipveicghk aigtvlvgpt pvniigrnll tqigctlnfp ispietvpvk lkpgmdgpkv kqwplteeki kalveictem ekegkiskig penpyntpvf aikkkdstkw rklvdfreln krtqdfwevq lgiphpaglk kkksvtvldv gdayfsvpld kdfrkytaft ipsinnetpg iryqynvlpq gwkgspaifq ssmtkilepf rkqnpdiviy qymddlyvgs dleigqhrtk ieelrqhllr wgfttpdkkh qkeppflwmg yelhpdkwtv qpimlpekds wtvndiqklv gklnwasqiy agikvkqlck llrgtkalte viplteeael elaenreilk epvhevyydp skdlvaeiqk qgqgqwtyqi yqepfknlkt gkyarmrgah tndvkqltea vqkvstesiv iwgkipkfkl piqketweaw wmeywqatwi pewefvntpp lvklwyqlek epivgaetfy vdgaanretk lgkagyvtdr grqkvvsiad ttnqktelqa ihlalqdsgl evnivtdsqy algiiqaqPD KSESELVsqi ieqlikkekv ylawvpahkg iggneqvdkl vsagirkvlf lngidkaqee hekyhsnwra masdfnlppv vakeivascd kcqlkgeamh gqvdcspgiw qldcthlegk iilvavhvas gyieaevipa etgqetayfl lklagrwpvk tihtdngsnf tsttvkaacw wagikqefgi pynpqsqgvv esmnnelkki igqvrdqaeh lktavqmavf ihnfkrkggi ggysageriv diiatdiqtK ELQKQITKiq nfrvyyrdnk dplwkgpakl lwkgegavvi qdnSDIKVVP RRKAKIIRDY GKQMAGDDCV ASRQDED
| JOB-ID | P03369_154659Zi0d838AAQEAAFxr1ZYAAABT |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P03369 |
| Description | sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) OX=11685 GN=gag-pol PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 1437 |
| Download predictions | smoothed scores raw scores |