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>P04588_LOOPS
1-29, 44-54, 128-155, 168-189, 214-245, 254-267, 283-300, 355-364, 387-430, 442-505, 517-544, 564-578, 585-619, 637-662, 682-752, 759-769, 778-788, 804-846, 857-866, 879-887, 901-914, 975-986, 1001-1015, 1022-1056, 1080-1092, 1098-1106, 1125-1138, 1174-1184, 1195-1220, 1233-1247, 1257-1273, 1287-1301, 1337-1348, 1378-1414, 1424-1440
MGARASVLSG GKLDAWEKIR LRPGGKKKYr lkhlvwasre lerFALNPGL LETGegcqqi meqlqstlkt gseeikslyn tvatlycvhq ridvkdtkea ldkieeiqnk srqktqqaaa aqqaaaaTKN SSSVSQNYPI VQNAQGQMIH QAISPrtlna wvkvieeKAF SPEVIPMFSA LSEGATPQDl nmmlnivggh qaamqmlkdt ineEAADWDR VHPVHAGPIP PGQMREPRGS DIAGTtstlq eqiGWMTSNP PIPVGDIykr wiilglnkiv rmYSPVSILD IRQGPKEPFR dyvdrffktl raeqatqevk nwmtetllvq nanpdcktil kalgpgatle emmtACQGVG GPSHkarvla eamsqatnst aaimmqRGNF KGQKRIKCFN CGKEGHLARN CRAPRKKGCW KCGKEGHQMK dcterqanfl rENLAFPQGK AREFPSEQTR ANSPTSRELR VWGGDKTLSE TGAERQGIVS FSFPQITLWQ RPVVTvrvgg qlkealLDTG ADDTVLEEIN LPGKWKPKMI GGIGgfikvr qydqilieic gkkAIGTILV GPTPVNIIgr nmltQIGCTL NFPISPIETV PVKLKPGMDG PRVKQWPLTe ekikalteic kdmekeGKIL KIGPENPYNT PVFAIKKKDS TKwrklvnfr elnkrtqdfw eVQLGIPHPA GLKKKKSVTV LDVGDAYFSV PLDEDFRKYT AFTIPSINNE TPGIRYQYNV LPQGWKGSPA IFqssmtkIL EPFRTKNPEi viyqymdDLY VGSDLEIGqh rtkieelreh llkWGFTTPD KKHQKEPPFL WMGYELHPDK WTVQPIQLPD KESWTVndiq klvgklNWAS QIYPGIkvkq lckllrgaKA LTDIVPLtae aelelaenre ILKEPVHGVY YDPSkdliae iqkqgqgqwt yqiyqeqykn lktgkyarik sahtndvkql teavqkiaqe siviWGKTPK FRLPIQketw eawwteywqa TWIPEWEFVN TPPLVklwyq lETEPIVGAE TFYVDGAANR ETKKGKAGYV TDRGRQkvvs ltettnqkte lqaihlalqD SGSEVNIVTD SQyalgiIQA QPDKSEseiv nqiieqliqk dkvyLSWVPA HKGIGGNEqv dklvssgirk vlfldgidka qeehekyhsn wraMASDFNL PPIVakeiva scdkCQLKGE AMHGQVDCSP GIWQLDCTHL egkiiivavh vaSGYIEAEV IPAETGQeta yfilklAGRW PVKVVHTDNG SNFtsaavka acwwanIKQE FGIPYNPQSQ Gvvesmnkel kkiigqvreq aehlktavqm avfihnFKRK GGIGGYSAge riidmiatdi qtkelqkqit kiqnfrvYYR DNRDPIWKGP AKLLWKGEGA VVIQDNSDIK VVPRrkakii rdyGKQMAGD DCVAGGQDED
>P04588_HOTLOOPS
1-31, 127-134, 288-298, 404-417, 446-473, 479-502, 516-540, 599-620, 636-664, 684-698, 723-733, 805-816, 971-982, 1032-1057, 1062-1069, 1396-1415, 1420-1440
MGARASVLSG GKLDAWEKIR LRPGGKKKYR Lkhlvwasre lerfalnpgl letgegcqqi meqlqstlkt gseeikslyn tvatlycvhq ridvkdtkea ldkieeiqnk srqktqqaaa aqqaaaATKN SSSVsqnypi vqnaqgqmih qaisprtlna wvkvieekaf spevipmfsa lsegatpqdl nmmlnivggh qaamqmlkdt ineeaadwdr vhpvhagpip pgqmreprgs diagttstlq eqigwmtsnp pipvgdiykr wiilglnkiv rmyspvsILD IRQGPKEPfr dyvdrffktl raeqatqevk nwmtetllvq nanpdcktil kalgpgatle emmtacqgvg gpshkarvla eamsqatnst aaimmqrgnf kgqkrikcfn cgkEGHLARN CRAPRKKgcw kcgkeghqmk dcterqanfl renlaFPQGK AREFPSEQTR ANSPTSRELR VWGgdktlSE TGAERQGIVS FSFPQITLWQ RPvvtvrvgg qlkeaLLDTG ADDTVLEEIN LPGKWKPKMI ggiggfikvr qydqilieic gkkaigtilv gptpvniigr nmltqigctl nfpispieTV PVKLKPGMDG PRVKQWPLTE ekikalteic kdmekEGKIL KIGPENPYNT PVFAIKKKDS TKWRklvnfr elnkrtqdfw evqLGIPHPA GLKKKKSVtv ldvgdayfsv pldedfrkyt afTIPSINNE TPGiryqynv lpqgwkgspa ifqssmtkil epfrtknpei viyqymddly vgsdleigqh rtkieelreh llkwGFTTPD KKHQKEppfl wmgyelhpdk wtvqpiqlpd keswtvndiq klvgklnwas qiypgikvkq lckllrgaka ltdivpltae aelelaenre ilkepvhgvy ydpskdliae iqkqgqgqwt yqiyqeqykn lktgkyarik sahtndvkql teavqkiaqe SIVIWGKTPK FRlpiqketw eawwteywqa twipewefvn tpplvklwyq letepivgae tFYVDGAANR ETKKGKAGYV TDRGRQKvvs lTETTNQKTe lqaihlalqd sgsevnivtd sqyalgiiqa qpdkseseiv nqiieqliqk dkvylswvpa hkgiggneqv dklvssgirk vlfldgidka qeehekyhsn wramasdfnl ppivakeiva scdkcqlkge amhgqvdcsp giwqldcthl egkiiivavh vasgyieaev ipaetgqeta yfilklagrw pvkvvhtdng snftsaavka acwwanikqe fgipynpqsq gvvesmnkel kkiigqvreq aehlktavqm avfihnfkrk ggiggysage riidmiatdi qtkelqkqit kiqnfrvyyr dnrdpiwkgp akllwKGEGA VVIQDNSDIK VVPRRkakiI RDYGKQMAGD DCVAGGQDED
>P04588_REM465
1-9, 109-134, 451-467, 1363-1372
MGARASVLSg gkldawekir lrpggkkkyr lkhlvwasre lerfalnpgl letgegcqqi meqlqstlkt gseeikslyn tvatlycvhq ridvkdtkea ldkieeiqNK SRQKTQQAAA AQQAAAATKN SSSVsqnypi vqnaqgqmih qaisprtlna wvkvieekaf spevipmfsa lsegatpqdl nmmlnivggh qaamqmlkdt ineeaadwdr vhpvhagpip pgqmreprgs diagttstlq eqigwmtsnp pipvgdiykr wiilglnkiv rmyspvsild irqgpkepfr dyvdrffktl raeqatqevk nwmtetllvq nanpdcktil kalgpgatle emmtacqgvg gpshkarvla eamsqatnst aaimmqrgnf kgqkrikcfn cgkeghlarn craprkkgcw kcgkeghqmk dcterqanfl renlafpqgk AREFPSEQTR ANSPTSRelr vwggdktlse tgaerqgivs fsfpqitlwq rpvvtvrvgg qlkealldtg addtvleein lpgkwkpkmi ggiggfikvr qydqilieic gkkaigtilv gptpvniigr nmltqigctl nfpispietv pvklkpgmdg prvkqwplte ekikalteic kdmekegkil kigpenpynt pvfaikkkds tkwrklvnfr elnkrtqdfw evqlgiphpa glkkkksvtv ldvgdayfsv pldedfrkyt aftipsinne tpgiryqynv lpqgwkgspa ifqssmtkil epfrtknpei viyqymddly vgsdleigqh rtkieelreh llkwgfttpd kkhqkeppfl wmgyelhpdk wtvqpiqlpd keswtvndiq klvgklnwas qiypgikvkq lckllrgaka ltdivpltae aelelaenre ilkepvhgvy ydpskdliae iqkqgqgqwt yqiyqeqykn lktgkyarik sahtndvkql teavqkiaqe siviwgktpk frlpiqketw eawwteywqa twipewefvn tpplvklwyq letepivgae tfyvdgaanr etkkgkagyv tdrgrqkvvs ltettnqkte lqaihlalqd sgsevnivtd sqyalgiiqa qpdkseseiv nqiieqliqk dkvylswvpa hkgiggneqv dklvssgirk vlfldgidka qeehekyhsn wramasdfnl ppivakeiva scdkcqlkge amhgqvdcsp giwqldcthl egkiiivavh vasgyieaev ipaetgqeta yfilklagrw pvkvvhtdng snftsaavka acwwanikqe fgipynpqsq gvvesmnkel kkiigqvreq aehlktavqm avfihnfkrk ggiggysage riidmiatdi qtKELQKQIT KIqnfrvyyr dnrdpiwkgp akllwkgega vviqdnsdik vvprrkakii rdygkqmagd dcvaggqded
| JOB-ID | P04588_172846ZivkTX8AAQEAAHG53rIAAAAS |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P04588 |
| Description | sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype A (isolate MAL) OX=11697 GN=gag-pol PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 1440 |
| Download predictions | smoothed scores raw scores |