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>P0C6V0_LOOPS
1-53, 59-70, 79-88, 102-111, 117-127, 135-147, 153-179, 192-235, 243-275, 320-340, 363-475, 483-491, 537-546, 565-587, 747-772, 777-853, 873-882, 895-907, 923-968, 975-988, 995-1031, 1041-1050, 1070-1080, 1096-1120, 1163-1179, 1224-1259, 1264-1274, 1299-1308, 1316-1330, 1342-1354, 1382-1396, 1403-1413, 1440-1447, 1464-1475, 1510-1519, 1531-1538, 1548-1598, 1639-1647, 1656-1670, 1676-1685, 1692-1701, 1709-1716, 1743-1750, 1760-1771, 1782-1859, 1866-1905, 1920-1949, 1981-2011, 2018-2032, 2038-2091, 2113-2152, 2194-2204, 2210-2220, 2244-2251, 2305-2320, 2333-2373, 2473-2539, 2551-2563, 2579-2590, 2599-2612, 2710-2723, 2736-2754, 2819-2837, 2862-2904, 2915-2925, 2933-2947, 2960-2986, 2995-3041, 3056-3095, 3184-3193, 3236-3246, 3311-3329, 3336-3351, 3357-3403, 3426-3444, 3451-3459, 3466-3486, 3499-3531, 3549-3561, 3604-3624, 3735-3745, 3886-3896, 3908-3916, 3982-3990, 3997-4004, 4034-4041, 4120-4150, 4179-4190, 4207-4215, 4221-4243, 4252-4284, 4316-4328, 4335-4356, 4365-4468
MAKMGKYGLG FKWAPEFPWM LPNASEKLGN PERSEEDGFC PSAAQEPKVK GKTlvnhvRV NCSRLPALEC cvqsaiirDI FVDEDPQKve astmmalqfg sAVLVKPSKR LsiqawTNLG VLPKTAAmgl fkrvCLCNTR ECSCDAHvaf hlFTVQPDGV CLGNGRFIGW FVPVTAIPEy akqwlqpwsi lLRKGGNKGS VTSGHFRRAV TMPVYDFNVE DACEEVHLNP KGKYSckaya llKGYRGVKP ILFVDQYGCD YTGCLAKGLE DYGDLtlsem kelfpvwrds ldsevlvawh vdrdpraamr lqtlatvrcI DYVGQPTEDV VDGDVVVREP ahllaanaiv krlprlvetm lyTDSSVTEF CYKTKLCECG FITQFGYVDC CGDTCDFRGW VAGNMMDGFP CPGCTKNYMP WELEAQSSGV IPEGGVLFTQ STDTVNRESF KLYGHAVVPF GSAVYWSPCP GMWLPviwss vkSYSGLTYT Gvvgckaivq etdaicrsly mdyvqhkcgn leqrailgld dvyhrqLLVN RGDYSLllen vdlfvkrrae fackFATCGD GLVPLLLDGL VPRSYYLiks gqaftsmmvn fshevtdmcm dmallfmhdv kvatkyvkkv tgklavrfka lgvavvrkit ewfdlavdia asaagwlcyq lvnglfavan gvitfvqevp elvknfvdkf kaffkvlids msvsilsglt vvktasnrvc lagskvyevv qkslsaYVMP VGCSEATCLV GEIEPAVFED DVvdvvKAPL TYQGCCKPPT SFEKICIVDK LYMAKCGDQF YPVVVDNDTV GVLDQCWRFP CAGKKVEFND KPKVRKIPST RKIkitfald atfdsvlska csEFEVDKDV TLdelldvvl daveSTLSPC KEHDVIGtkv calldrlagd yvYLFDEGGD EVIAPRMYCS FSAPDDEDCV AADVVDADEN QDDDAEDSav lvadTQEEDG VAKGQVEAds eicvAHTGSQ EELAEPDAVG SQTPIASAEE TEVGEASDRE Giaeakatvc ADAVDACPDQ veafeiekve dsildelqtE LNAPADKTYE dvlafdavcs ealsaFYAVP SDETHFKVCG FYSPAIERTN cwlrstlivm qslplefkdl emqklwlsyk agydqcfvdk lvKSVPKSII LPQGGYVADf ayfflsqcsf kayanwrcle cdmelklqgl damffygdvv shmCKCGNSM TLLSADIPYT LHFGVRDDKF CAFYTPRKVf raaCAVDVND CHSMavvegk qidgkvvtkf igdkfdfmVG YGMTFSMSpf elaqlYGSCI TPNVCFVKGD vikvvrlvna eVIVNPANGR MAHGagvaga iaekagsafi ketsdmvkaq gVCQVGECYE SAGGKLckkv lnIVGPDARG HGKqcyslle rayqhinkcd nvvttlisaG IFSVPTDvsl tyllgvvtkn vilVSNNQDD FDVIEkcqvt svagtkalsl qlaknlcrdv kfvtnacssL FSESCFVSSy dvlqevealr HDIQLDDDar vfvqanmDCL PTDWRLVNKF DSVDGVRTIK YFECPGGIFV SSQGKKFGYV QNGSFKEAsv sqirallank vdvlctvdgv nfrsccvaeg evfgktlgSV FCDGINVtkv rcsaiYKGKV FFQYSDLSEA dlvavKDAFG FDEPQllkyy tMLGMCKWPV VvcgnyfaFK QSNNNCyinv aclmlqhlsl kfpkwqwqea wnEFRSGKPL rfvslvlakG SFKFNEPSDS Idfmrvvlre aDLSGATCNL EFVCKCGVKQ EQRKGVDAVM HFGTLDKGDL VRGYNIACTC GSKLVHCTQF NVPFLICSNT PEGRKLPDDv vaaniFTGGS VGHYTHVKCK PKYQLYDACN VNKVSEAKGN FTDCLylknl kqtfssvltT FYLDDVKCVE YKPDLSQYYC ESGKYYTKPi ikaqfrtfek vdgvytnfkl vghsiaekln AKLGFDCNSP FVEYKITEWP TATGDVVLAS DdlyvsrYSS GCITFGKPVV WLgheeaSLK SLTYFNRPSV VCENKFNVLP VDVSEPTDKG PVPAAVLVTG VPGADASAGA Giakeqkaca sasvedqvvt evRQEPSVSA ADVKEVKLNG VKKPVKVEGS VVVNDPTSET KVvkslsivd vydmfltgck yvvwtanels rlvnsptvre yvkWGMGKIV TPAKllllrD EKQEFVAPKV vkakaiacyc avkwfllycf swiKFNTDNK Viyttevask ltfklcclaf knalqtfnws vvsrgfflva tvfllwfnfl yanvILSDFY LPNIGPLPTF vgqivawfkt tfGVSTICDF YQVTDLGYRS SFCNGSMVCE LCFSGFDMLD NYDainvvqh vvdrrlsfdy islfklvvel vigyslytvc fyplfvligm qllttwlpef fmletmhwsa rlfvfvanml paftllrfyi vvtamykvyc lcRHVMYGCS KPGCLFCYKR NRSVRVKCST VVGGSLRYYD VMANGGTGFC TKHQWNCLNC NSWKPGNTFi theaaadlsk ELKRPVNPTD SAYysvtevk qvgcsmrlFY ERDGQRVYDD vnaslfvdMN GLLHSKVKGV PEthvvvven eadkagflga avfyaqslyr pmlmvekkli ttantglsvs rtmfdlyvds llnvldvdrk sltsfvnaah nslkegvqle qvmdtfigcA RRKCAIDSDV ETKsitksvm savnaGVDFT DESCNNLVPT YVKSdtivaa dlgvliqnna khvqanvaka anvaciwsvd afnqlsadlq hrlrkacskt glkikltyNK QEANVPILTT PFSLKGGavf srmlqwlfva nlicfivlwa lMPTYAVHKS DMQLPLYASF KVIDNGVLRD VSVTDACFAN KFNQfdqwye stfgLAYYRN SKACPvvvav idQDIGHTLF NVPTTVLryg fhvlhfithA FATDSVQCYT PHMQIPYDNF YASGCVlssl ctmlAHADGT PHPYCYTGGV MHNASLYSSL APHVRYNLAS SNGYIRFPEV Vsegivrvvr trsmtYCRVG LCEEAEEGIC FNFNRSWVLN NPYYRAMPGT FCGRNafdli hqvlgglvrp idffaltass vagailaiiv vlafyylikl krafgdytsv vvinvivwci nflmlfvfqv yptlsclyac fyfYTTLYFP SEIsvvmhlq wlvmygaimp lwfciiyvav vvsnhalwlf sycrkIGTEV RSDGTFeema lttfmitkes ycklknsvsd vafnrylsly nkyryfsgkm dtaayreaac sqlakametf NHNNGNDVLY QPPTASVTTs flqsgIVKMV SPTSKVEPCI VsvtygNMTL NGLWLDDKVY CPRHVICSSA DMTDPDYPNL LCRVTSSDFC VMSgrmsltv msyqmqgcql vltvtLQNPN TPKYSFGVVK PGETftvlaa YNGRPQGAFh vtlrsSHTIK GSFLCGSCGS VGYVLTgdsv rfvymhqlEL STGCHTGTDF SGNFYGPYRD AQVVQLPVQD Ytqtvnvvaw lyaaifnrCN WFVQSDSCSL Eefnvwamtn gfssikadlv ldalasmtgv tveqvlaaik rlhSGFQGKQ ILGSCVLEDE TPSDvyqqla gvklqskrtr vikgtccwil astflfcsii safvkwtmfm yvtthmlgvt lcalcfvsfa mllikhkhly ltmyimpvlc tfytnylvvy kqsfrglaya wlshFVPAVD YTYMDevlyg vvllvamvfv tmrsinhdvf simflvgrlv slvsmwyfga nleeevllfl tslfgtytwt tmlslatakv iakwlavnvl yftdvpqikl vllsylcigy vcccywgils llnsifrmpl gvynykisvq elrymNANGL RPPRNSfeal mlnfkllGIG GVPVIEvsqi qsrltdvkca nvvllnclqh lhiasnsklw qycstlhnei latsdlsmaf dklaqllvvl fANPAAVDSK clasieEVSD DYVRdntvlq alqsefvnma sfveyelakk nldEAKASGS Anqqqikqle kacniaksay erdravarkl ermadlaltn mykearindk kskvvsalqt mlfsmvrkld nqalnsildN AVKGCVPLNA IPSLTSNTLT IIVPDKQVFD qvvdnvyvty agnvwhiqfi qdadgavkQL NEIDVNSTWP lviaanrhne vstvvlQNNE LMPQKlrtqv VNSGSDMNCN TPTQCYYNTT GTGkivyail sDCDGLKYTK IVKEDGNCVV LELDPPCKFS VQDVkglkik ylyfvkgcnt largwvvgtl sstvrLQAGT ATEYASNSai lslcAFSVDP KKTYLDYIKQ GGVPVTncvk mlcdHAGTGM AITIKPEATT NQDSYGGASV CIYCRSRVEH PDVDGLCKLR GKFVQVPLGI KDPVSYVLTH DVCQVCGFWR DGSCSCVGTG SQFQSKDTNF LNGFGVQV
>P0C6V0_HOTLOOPS
1-18, 44-54, 226-233, 780-791, 829-861, 896-907, 998-1016, 1276-1286, 1344-1352, 1548-1559, 1761-1771, 1798-1806, 2113-2159, 2176-2184, 2653-2661, 2691-2699, 2816-2827, 3032-3043, 3339-3348, 3379-3388, 3631-3640, 4080-4092, 4206-4214, 4323-4330, 4376-4386, 4450-4468
MAKMGKYGLG FKWAPEFPwm lpnaseklgn perseedgfc psaAQEPKVK GKTLvnhvrv ncsrlpalec cvqsaiirdi fvdedpqkve astmmalqfg savlvkpskr lsiqawtnlg vlpktaamgl fkrvclcntr ecscdahvaf hlftvqpdgv clgngrfigw fvpvtaipey akqwlqpwsi llrkggnkgs vtsghfrrav tmpvydfnve daceeVHLNP KGKysckaya llkgyrgvkp ilfvdqygcd ytgclakgle dygdltlsem kelfpvwrds ldsevlvawh vdrdpraamr lqtlatvrci dyvgqptedv vdgdvvvrep ahllaanaiv krlprlvetm lytdssvtef cyktklcecg fitqfgyvdc cgdtcdfrgw vagnmmdgfp cpgctknymp weleaqssgv ipeggvlftq stdtvnresf klyghavvpf gsavywspcp gmwlpviwss vksysgltyt gvvgckaivq etdaicrsly mdyvqhkcgn leqrailgld dvyhrqllvn rgdyslllen vdlfvkrrae fackfatcgd glvpllldgl vprsyyliks gqaftsmmvn fshevtdmcm dmallfmhdv kvatkyvkkv tgklavrfka lgvavvrkit ewfdlavdia asaagwlcyq lvnglfavan gvitfvqevp elvknfvdkf kaffkvlids msvsilsglt vvktasnrvc lagskvyevv qkslsayvmp vgcseatclv geiepavfed dvvdvvkapL TYQGCCKPPT Sfekicivdk lymakcgdqf ypvvvdndtv gvldqcwrFP CAGKKVEFND KPKVRKIPST RKIKITFALD Atfdsvlska csefevdkdv tldelldvvl davesTLSPC KEHDVIGtkv calldrlagd yvylfdeggd eviaprmycs fsapddedcv aadvvdaden qdddaedsav lvadtqeedg vakgqveads eicvahtGSQ EELAEPDAVG SQTPIAsaee tevgeasdre giaeakatvc adavdacpdq veafeiekve dsildelqte lnapadktye dvlafdavcs ealsafyavp sdethfkvcg fyspaiertn cwlrstlivm qslplefkdl emqklwlsyk agydqcfvdk lvksvpksii lpqggyvadf ayfflsqcsf kayanwrcle cdmelklqgl damffygdvv shmckcgnsm tllsadipyt lhfgvrddkf cafytprkvf raacavdvnd chsmaVVEGK QIDGKVvtkf igdkfdfmvg ygmtfsmspf elaqlygsci tpnvcfvkgd vikvvrlvna eviVNPANGR MAhgagvaga iaekagsafi ketsdmvkaq gvcqvgecye saggklckkv lnivgpdarg hgkqcyslle rayqhinkcd nvvttlisag ifsvptdvsl tyllgvvtkn vilvsnnqdd fdviekcqvt svagtkalsl qlaknlcrdv kfvtnacssl fsescfvssy dvlqevealr hdiqldddar vfvqanmDCL PTDWRLVNKf dsvdgvrtik yfecpggifv ssqgkkfgyv qngsfkeasv sqirallank vdvlctvdgv nfrsccvaeg evfgktlgsv fcdginvtkv rcsaiykgkv ffqysdlsea dlvavkdafg fdepqllkyy tmlgmckwpv vvcgnyfafk qsnnncyinv aclmlqhlsl kfpkwqwqea wnefrsgkpl rfvslvlakg SFKFNEPSDS Idfmrvvlre adlsgatcnl efvckcgVKQ EQRKGVdavm hfgtldkgdl vrgyniactc gsklvhctqf nvpflicsnt pegrklpddv vaaniftggs vghythvkck pkyqlydacn vnkvseakgn ftdclylknl kqtfssvltt fylddvkcve ykpdlsqyyc esgkyytkpi ikaqfrtfek vdgvytnfkl vghsiaekln aklgfdcnsp fveykitewp tatgdvvlas ddlyvsryss gcitfgkpvv wlgheeaslk sltyfnrpsv vcenkfnvlp vdvseptdkg pvpaavlvtg vpgadasaga giakeqkaca sasvedqvvt evRQEPSVSA ADVKEVKLNG VKKPVKVEGS VVVNDPTSET KVVKSLSIVd vydmfltgck yvvwtANELS RLVNsptvre yvkwgmgkiv tpakllllrd ekqefvapkv vkakaiacyc avkwfllycf swikfntdnk viyttevask ltfklcclaf knalqtfnws vvsrgfflva tvfllwfnfl yanvilsdfy lpnigplptf vgqivawfkt tfgvsticdf yqvtdlgyrs sfcngsmvce lcfsgfdmld nydainvvqh vvdrrlsfdy islfklvvel vigyslytvc fyplfvligm qllttwlpef fmletmhwsa rlfvfvanml paftllrfyi vvtamykvyc lcrhvmygcs kpgclfcykr nrsvrvkcst vvggslryyd vmanggtgfc tkhqwnclnc nswkpgntfi theaaadlsk elkrpvnptd sayysvtevk qvgcsmrlfy erdgqrvydd vnaslfvdmn gllhskvkgv pethvvvven eadkagflga avfyaqslyr pmlmvekkli ttANTGLSVS Rtmfdlyvds llnvldvdrk sltsfvnaah NSLKEGVQLe qvmdtfigca rrkcaidsdv etksitksvm savnagvdft descnnlvpt yvksdtivaa dlgvliqnna khvqanvaka anvaciwsvd afnqlsadlq hrlrkacskt glkikLTYNK QEANVPIltt pfslkggavf srmlqwlfva nlicfivlwa lmptyavhks dmqlplyasf kvidngvlrd vsvtdacfan kfnqfdqwye stfglayyrn skacpvvvav idqdightlf nvpttvlryg fhvlhfitha fatdsvqcyt phmqipydnf yasgcvlssl ctmlahadgt phpycytggv mhnaslyssl aphvrynlas sNGYIRFPEV VSEgivrvvr trsmtycrvg lceeaeegic fnfnrswvln npyyrampgt fcgrnafdli hqvlgglvrp idffaltass vagailaiiv vlafyylikl krafgdytsv vvinvivwci nflmlfvfqv yptlsclyac fyfyttlyfp seisvvmhlq wlvmygaimp lwfciiyvav vvsnhalwlf sycrkigtev rsdgtfeema lttfmitkes ycklknsvsd vafnrylsly nkyryfsgkm dtaayreaac sqlakametf nhnngndvly qpptasvtts flqsgivkMV SPTSKVEPci vsvtygnmtl nglwlddkvy cprhvicsSA DMTDPDYPnl lcrvtssdfc vmsgrmsltv msyqmqgcql vltvtlqnpn tpkysfgvvk pgetftvlaa yngrpqgafh vtlrsshtik gsflcgscgs vgyvltgdsv rfvymhqlel stgchtgtdf sgnfygpyrd aqvvqlpvqd ytqtvnvvaw lyaaifnrcn wfvqsdscsl eefnvwamtn gfssikadlv ldalasmtgv tveqvlaaik rlhsgfqgkq ilgscvlede tpsdvyqqla GVKLQSKRTR vikgtccwil astflfcsii safvkwtmfm yvtthmlgvt lcalcfvsfa mllikhkhly ltmyimpvlc tfytnylvvy kqsfrglaya wlshfvpavd ytymdevlyg vvllvamvfv tmrsinhdvf simflvgrlv slvsmwyfga nleeevllfl tslfgtytwt tmlslatakv iakwlavnvl yftdvpqikl vllsylcigy vcccywgils llnsifrmpl gvynykisvq elrymnangl rpprnsfeal mlnfkllgig gvpvievsqi qsrltdvkca nvvllnclqh lhiasnsklw qycstlhnei latsdlsmaf dklaqllvvl fanpaavdsk clasieevsd dyvrdntvlq alqsefvnma sfveyelakk nldeakasgs anqqqikqle kacniaksay erdravarkl ermadlaltN MYKEARINDK KSkvvsalqt mlfsmvrkld nqalnsildn avkgcvplna ipsltsntlt iivpdkqvfd qvvdnvyvty agnvwhiqfi qdadgavkql neidvnstwp lviaanrhne vstvvLQNNE LMPQklrtqv vnsgsdmncn tptqcyyntt gtgkivyail sdcdglkytk ivkedgncvv leldppckfs vqdvkglkik ylyfvkgcnt largwvvgtl sstvrlqagt atEYASNSAI lslcafsvdp kktyldyikq ggvpvtncvk mlcdhagtgm aitikPEATT NQDSYGgasv ciycrsrveh pdvdglcklr gkfvqvplgi kdpvsyvlth dvcqvcgfwr dgscscvgtG SQFQSKDTNF LNGFGVQV
>P0C6V0_REM465
28-40, 959-966, 978-986, 999-1028, 2086-2107, 4035-4046
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| JOB-ID | P0C6V0_141145ZipkoX8AAQEAAB1mKxAAAABH |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P0C6V0 |
| Description | sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus (strain A59) OX=11142 GN=1a PE=1 SV=1 |
| Title/ID | none |
| Sequence length | 4468 |
| Download predictions | smoothed scores raw scores |