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>P12497_LOOPS
1-30, 43-54, 64-72, 120-149, 162-183, 211-239, 248-260, 275-294, 349-358, 368-424, 435-501, 512-539, 557-573, 580-614, 630-660, 677-748, 753-765, 773-783, 799-841, 872-884, 896-909, 932-951, 970-982, 996-1009, 1018-1061, 1075-1086, 1093-1101, 1123-1135, 1169-1178, 1190-1215, 1229-1242, 1252-1270, 1281-1296, 1332-1343, 1372-1409, 1419-1435
MGARASVLSG GELDKWEKIR LRPGGKKQYK lkhivwasre leRFAVNPGL LETSegcrqi lgqLQPSLQT GSeelrslyn tiavlycvhq ridvkdtkea ldkieeeqnk skkkaqqaaA DTGNNSQVSQ NYPIVQNLQG QMVHQAISPr tlnawvkvve eKAFSPEVIP MFSALSEGAT PQDlntmlnt vgghqaamqm lketineeaa EWDRLHPVHA GPIAPGQMRE PRGSDIAGTt stlqeqiGWM THNPPIPVGE iykrwiilgl nkivRMYSPT SILDIRQGPK EPFRdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpg atleemmtAC QGVGGPGHka rvlaeamSQV TNPATIMIQK GNFRNQRKTV KCFNCGKEGH IAKNCRAPRK KGCWKCGKEG HQMKdcterq anflREDLAF PQGKAREFSS EQTRANSPTR RELQVWGRDN NSLSEAGADR QGTVSFSFPQ ITLWQRPLVT Ikiggqlkea lLDTGADDTV LEEMNLPGRW KPKMIGGIGg fikvrqydqi lieicgHKAI GTVLVGPTPV NIIgrnlltQ IGCTLNFPIS PIETVPVKLK PGMDGPKVKQ WPLTeekika lveictemeK EGKISKIGPE NPYNTPVFAI KKKDSTKWRK lvdfrelnkr tqdfweVQLG IPHPAGLKQK KSVTVLDVGD AYFSVPLDKD FRKYTAFTIP SINNETPGIR YQYNVLPQGW KGSPAIFQcs mtKILEPFRK QNPDIviyqy mdDLYVGSDL EIGqhrtkie elrqhllrWG FTTPDKKHQK EPPFLWMGYE LHPDKWTVQP IVLPEKDSWT Vndiqklvgk lnwasqiyag ikvrqlckll rGTKALTEVV PLTEeaelel aenreILKEP VHGVYYDPSk dliaeiqkqg qgqwtyqiyq ePFKNLKTGK YARMKGAHTN Dvkqlteavq kiatesiviW GKTPKFKLPI QKetweawwt eywqaTWIPE WEFVNTPPLv klwyqleKEP IIGAETFYVD GAANRETKLG KAGYVTDRGR QKVVPLTDTT Nqktelqaih lalqDSGLEV NIVTDSqyal giIQAQPDKS Eselvsqiie qlikkekvyl awVPAHKGIG GNEQVdglvs agirkvlfld gidkaqeehe kyhsnwraMA SDFNLPPVva keivascdkC QLKGEAMHGQ VDCSPGIWQL DCTHLegkvi lvavhvasGY IEAEVIPAET GQetayfllk lAGRWPVKTV HTDNGSNFTS ttvkaacwwa GIKQEFGIPY NPQSQGvies mnkelkkiig qvrdqaehlk tavqmavfih nFKRKGGIGG YSAgerivdi iatdiqtkel qkqitkiqnf rVYYRDSRDP VWKGPAKLLW KGEGAVVIQD NSDIKVVPRr kakiirdyGK QMAGDDCVAS RQDED
>P12497_HOTLOOPS
1-31, 120-129, 280-292, 377-386, 393-410, 439-468, 522-535, 594-615, 630-659, 679-693, 703-711, 718-729, 801-811, 874-886, 891-901, 965-979, 1034-1062, 1260-1270, 1365-1380, 1389-1410, 1416-1435
MGARASVLSG GELDKWEKIR LRPGGKKQYK Lkhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tiavlycvhq ridvkdtkea ldkieeeqnk skkkaqqaaA DTGNNSQVSq nypivqnlqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrlhpvha gpiapgqmre prgsdiagtt stlqeqigwm thnppipvge iykrwiilgl nkivrmyspT SILDIRQGPK EPfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpg atleemmtac qgvggpghka rvlaeamsqv tnpatiMIQK GNFRNQrktv kcFNCGKEGH IAKNCRAPRK kgcwkcgkeg hqmkdcterq anflredlAF PQGKAREFSS EQTRANSPTR RELQVWGRdn nslseagadr qgtvsfsfpq itlwqrplvt ikiggqlkea lldtgaddtv lEEMNLPGRW KPKMIggigg fikvrqydqi lieicghkai gtvlvgptpv niigrnlltq igctlnfpis pieTVPVKLK PGMDGPKVKQ WPLTEekika lveictemeK EGKISKIGPE NPYNTPVFAI KKKDSTKWRk lvdfrelnkr tqdfwevqLG IPHPAGLKQK KSVtvldvgd ayFSVPLDKD FrkytafTIP SINNETPGIr yqynvlpqgw kgspaifqcs mtkilepfrk qnpdiviyqy mddlyvgsdl eigqhrtkie elrqhllrwg FTTPDKKHQK Eppflwmgye lhpdkwtvqp ivlpekdswt vndiqklvgk lnwasqiyag ikvrqlckll rgtKALTEVV PLTEEAelel AENREILKEP Vhgvyydpsk dliaeiqkqg qgqwtyqiyq epfknlktgk yarmkgahtn dvkqlteavq kiatESIVIW GKTPKFKLPi qketweawwt eywqatwipe wefvntpplv klwyqlekep iigaetfyvd gaaNRETKLG KAGYVTDRGR QKVVPLTDTT NQktelqaih lalqdsglev nivtdsqyal giiqaqpdks eselvsqiie qlikkekvyl awvpahkgig gneqvdglvs agirkvlfld gidkaqeehe kyhsnwrama sdfnlppvva keivascdkc qlkgeamhgq vdcspgiwql dcthlegkvi lvavhvasgy ieaevipaet gqetayfllk lagrwpvktV HTDNGSNFTS ttvkaacwwa gikqefgipy npqsqgvies mnkelkkiig qvrdqaehlk tavqmavfih nfkrkggigg ysagerivdi iatdiqtkel qkqiTKIQNF RVYYRDSRDP vwkgpaklLW KGEGAVVIQD NSDIKVVPRR kakiiRDYGK QMAGDDCVAS RQDED
>P12497_REM465
1-9, 106-126, 444-464, 1097-1105, 1358-1367, 1402-1435
MGARASVLSg geldkwekir lrpggkkqyk lkhivwasre lerfavnpgl letsegcrqi lgqlqpslqt gseelrslyn tiavlycvhq ridvkdtkea ldkieEEQNK SKKKAQQAAA DTGNNSqvsq nypivqnlqg qmvhqaispr tlnawvkvve ekafspevip mfsalsegat pqdlntmlnt vgghqaamqm lketineeaa ewdrlhpvha gpiapgqmre prgsdiagtt stlqeqigwm thnppipvge iykrwiilgl nkivrmyspt sildirqgpk epfrdyvdrf yktlraeqas qevknwmtet llvqnanpdc ktilkalgpg atleemmtac qgvggpghka rvlaeamsqv tnpatimiqk gnfrnqrktv kcfncgkegh iakncraprk kgcwkcgkeg hqmkdcterq anflredlaf pqgKAREFSS EQTRANSPTR RELQvwgrdn nslseagadr qgtvsfsfpq itlwqrplvt ikiggqlkea lldtgaddtv leemnlpgrw kpkmiggigg fikvrqydqi lieicghkai gtvlvgptpv niigrnlltq igctlnfpis pietvpvklk pgmdgpkvkq wplteekika lveictemek egkiskigpe npyntpvfai kkkdstkwrk lvdfrelnkr tqdfwevqlg iphpaglkqk ksvtvldvgd ayfsvpldkd frkytaftip sinnetpgir yqynvlpqgw kgspaifqcs mtkilepfrk qnpdiviyqy mddlyvgsdl eigqhrtkie elrqhllrwg fttpdkkhqk eppflwmgye lhpdkwtvqp ivlpekdswt vndiqklvgk lnwasqiyag ikvrqlckll rgtkaltevv plteeaelel aenreilkep vhgvyydpsk dliaeiqkqg qgqwtyqiyq epfknlktgk yarmkgahtn dvkqlteavq kiatesiviw gktpkfklpi qketweawwt eywqatwipe wefvntpplv klwyqlekep iigaetfyvd gaanretklg kagyvtdrgr qkvvpltdtt nqktelqaih lalqdsglev nivtdsqyal giiqaqPDKS ESELVsqiie qlikkekvyl awvpahkgig gneqvdglvs agirkvlfld gidkaqeehe kyhsnwrama sdfnlppvva keivascdkc qlkgeamhgq vdcspgiwql dcthlegkvi lvavhvasgy ieaevipaet gqetayfllk lagrwpvktv htdngsnfts ttvkaacwwa gikqefgipy npqsqgvies mnkelkkiig qvrdqaehlk tavqmavfih nfkrkggigg ysagerivdi iatdiqtKEL QKQITKIqnf rvyyrdsrdp vwkgpakllw kgegavviqd nSDIKVVPRR KAKIIRDYGK QMAGDDCVAS RQDED
| JOB-ID | P12497_023730ZisTan8AAQEAAB1mLigAAABY |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P12497 |
| Description | sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate NY5) OX=11698 GN=gag-pol PE=1 SV=4 |
| Title/ID | none |
| Sequence length | 1435 |
| Download predictions | smoothed scores raw scores |