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>P27958_LOOPS
1-122, 132-146, 161-173, 185-211, 220-258, 287-315, 381-396, 402-409, 417-434, 445-456, 463-624, 645-688, 778-785, 858-871, 945-961, 984-1021, 1045-1056, 1078-1177, 1188-1247, 1256-1330, 1348-1362, 1368-1395, 1420-1431, 1439-1532, 1542-1556, 1567-1584, 1595-1605, 1613-1628, 1687-1698, 1709-1719, 1776-1785, 1796-1805, 1869-1879, 1884-1891, 1903-1911, 1924-1939, 1965-1977, 1998-2080, 2098-2167, 2174-2182, 2188-2224, 2238-2247, 2252-2271, 2279-2336, 2349-2415, 2421-2444, 2454-2475, 2507-2529, 2548-2588, 2601-2619, 2630-2656, 2680-2707, 2726-2735, 2763-2812, 2820-2832, 2867-2901, 2911-2920, 2953-2989, 3004-3011
MSTNPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKARR PEGRTWAQPG YPWPLYGNEG CGWAGWLLSP RGSRPSWGPT DPRRRSRNLG KVidtltcgf aDLMGYIPLV GAPLGGaara lahgvrvled GVNYATGNLP GCSfsiflla llscLTVPAS AYQVRNSSGL YHVTNDCPNS SvvyeaadaI LHTPGCVPCV REGNASRCWV AVTPTVATRD GKLPTTQLrr hidllvgsat lcsalyvgdl cgsvflVGQL FTFSPRHHWT TQDCNCSIYP GHITGhrmaw nmmmnwspta alvvaqllri pqaimdmiag ahwgvlagik yfsmvgnwak vlvvlllfag VDAETHVTGG NAGRTTaglv gLLTPGAKQn iqlintNGSW HINSTALNCN ESLNtgwlag lfyqHKFNSS GCPERLascr rlTDFAQGWG PISYANGSGL DERPYCWHYP PRPCGIVPAK SVCGPVYCFT PSPVVVGTTD RSGAPTYSWG ANDTDVFVLN NTRPPLGNWF GCTWMNSTGF TKVCGAPPCV IGGVGNNTLL CPTDCFRKYP EATYSRCGSG PRITPRCMVD YPYRLWHYPC TINYtifkvr myvggvehrl eaacNWTRGE RCDLEDRDRS ELSPLLLSTT QWQVLPCSFT TLPALSTGli hlhqnivdvq ylygvgssia swaikweyvv llfllladar vcsclwmmll isqaeaalen lvilnaasla gthglvsflv ffcfawyLKG RWVPGavyal ygmwplllll lalpqrayal dtevaascgg vvlvglmalt lspyykryis wcmwwlqyfl trveaqlHVW VPPLNVRGGR Davilltcvv hpalvfditk lllaifgplw ilqasllkvp yfvrvqgllr icalarkiag ghyvqmaiik lgalTGTCVY NHLAPLRDWA Hnglrdlava vepvvfsrme tklITWGADT AACGDIINGL PVSARRGQEI LLGPADGMVS Kgwrllapit ayaqqtrgll gciiTSLTGR DKNQVEgevq ivstatqtfl atcingvCWT VYHGAGTRTI ASPKGPVIQT YTNVDQDLVG WPAPQGSRSL TPCTCGSSDL YLVTRHADVI PVRRRGDSRG SLLSPRPISY LKGSSGGPLL CPTGHAVglf raavctrGVA KAVDFIPVEN LETTMRSPVF TDNSSPPAVP QSFQVAHLHA PTGSGKSTKV PAAYAAKgyk vlvlnPSVAA TLGFGAYMSK AHGVDPNIRT GVRTITTGSP ITYSTYGKFL ADAGCSGGAY DIIICDECHS TDATSISGIG tvldqaetag arlvvlaTAT PPGSVTVSHP NIeevalSTT GEIPFYGKAI PLEVIKGGRH LIFCHskkkc delaaklval ginavayyrG LDVSVIPTSG DvvvvstdAL MTGFTGDFDS VIDCNTCVTQ TVDFSLDPTF TIETTTLPQD AVSRTQRRGR TGRGKPGIYR FVAPGERPSG MFDSSVLCEC YDAGCAWYEL TPaettvrlr aYMNTPGLPV CQDHLGfweg vftgltHIDA HFLSQTKQSG ENFPylvayq atvcARAQAP PPSWDqmrkc liRLKPTLHG PTPLLYRLga vqnevtlthp itkyimtcms adlevvtstw vlvggvlaal aayclstgcv vivgriVLSG KPAIIPDRev lyqefdemEE CSQHLPYIEq gmmlaeqfkq kalgllqtas rhaevitpav qtnwqklevf wakhmwnfis giqylAGLST LPGNPaiasl maftaAVTSP LTTGQtllfn ilggwvaaql aapgaatafv gaglagaald svglgkvlvd ilagygagva galvafkiMS GEVPSTEDLv nllPAILSPG Alavgvvfas ilRRRVGPGE Gavqwmnrli afaSRGNHVS PTHYVPESDa aarvtailss ltvtqllrrl hqwiSSECTT PCSGSWLrdi wdwicevlsd fktwlkaKLM PQLPGIPFVS CQRGYRGVWR GDGIMHTRCH CGAEITGHVK NGTMRIVGPR TCKNMWSGTF FINAYTTGPC TPLPAPNYKF alwrvsaeey veirrvgDFH YVSGMTTDNL KCPCQIPSPE FFTELDGVRL HRFAPPCKPL LREEVSFRVG LHEYPVGSQL PCEPEPDvav ltsMLTDPSH ITaeaagRRL ARGSPPSMAS SSASQLSAPS LKATCTANHD SPDAeliean llwrqemGGN ITRVESEnkv vILDSFDPLV AEEDEREVSV PaeilrksRR FAPALPVWAR PDYNPLLVET WKKPDYEPPV VHGCPLPPPR SPPVPPPRKK RTVVLTestl ptalaelaTK SFGSSSTSGI TGDNTTTSSE PAPSGCPPDS DVESYSSMPP LEGEPGDPDL SDGSWSTVSS GADTEdvvcc SMSYSWTGAL VTPCAAEEQK LPINalsnsl lrhHNLVYST TSRSACQRKK KVTFDrlqvl dshyqdvlke vkaaaskvka nllsveEACS LAPPHSAKSK FGYGAKDVRc harkavahin svwkdllEDS VTPIDTTIMA KNEVFCVQPE KGGRKPARLI VFPDLGVRvc ekmalydvvs KLPLAVMGSS YGFQYSPGQr veflvqawkS KKTPMGLSYD TRCFDSTVTE SDIRTEeaiy qccdldpqar vaikslterL YVGGPLTNSR GENCGYRRCR ASRVLTTscg ntltryikar aacraAGLQD CTMLVcgddl vvicesagvq edaaslraft eaMTRYSAPP GDPPQPEYDL ELITSCSSNV SVAHDGAGKR VYYLTRDPTT PLaraawetA RHTPVNSWLG NIimfaptlw armilmthff svliardqle qalnceIYGA CYSIEPLDLP PIIQRLHGLS AFSLHSYSPG Einrvaaclr KLGVPPLRAW rhrawsvrar llarggkaai cgkylfnwav rtKLKLTPIT AAGRLDLSGW FTAGYSGGDI YHSVSHARPr wfwfclllla agvGIYLLPN R
>P27958_HOTLOOPS
1-77, 103-120, 244-257, 593-604, 1087-1096, 1134-1156, 1270-1282, 1350-1360, 1471-1509, 1687-1695, 2001-2010, 2034-2043, 2154-2163, 2241-2249, 2256-2293, 2316-2328, 2346-2375, 2458-2470, 2566-2583, 2632-2644, 2678-2711, 2820-2831, 2914-2921
MSTNPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKARR PEGRTWAqpg ypwplygneg cgwagwllsp rgSRPSWGPT DPRRRSRNLG kvidtltcgf adlmgyiplv gaplggaara lahgvrvled gvnyatgnlp gcsfsiflla llscltvpas ayqvrnssgl yhvtndcpns svvyeaadai lhtpgcvpcv regnasrcwv avtPTVATRD GKLPTTQlrr hidllvgsat lcsalyvgdl cgsvflvgql ftfsprhhwt tqdcncsiyp ghitghrmaw nmmmnwspta alvvaqllri pqaimdmiag ahwgvlagik yfsmvgnwak vlvvlllfag vdaethvtgg nagrttaglv glltpgakqn iqlintngsw hinstalncn eslntgwlag lfyqhkfnss gcperlascr rltdfaqgwg pisyangsgl derpycwhyp prpcgivpak svcgpvycft pspvvvgttd rsgaptyswg andtdvfvln ntrpplgnwf gctwmnstgf tkvcgappcv iggvgnntll cptdcfrkyp eaTYSRCGSG PRITprcmvd ypyrlwhypc tinytifkvr myvggvehrl eaacnwtrge rcdledrdrs elsplllstt qwqvlpcsft tlpalstgli hlhqnivdvq ylygvgssia swaikweyvv llfllladar vcsclwmmll isqaeaalen lvilnaasla gthglvsflv ffcfawylkg rwvpgavyal ygmwplllll lalpqrayal dtevaascgg vvlvglmalt lspyykryis wcmwwlqyfl trveaqlhvw vpplnvrggr davilltcvv hpalvfditk lllaifgplw ilqasllkvp yfvrvqgllr icalarkiag ghyvqmaiik lgaltgtcvy nhlaplrdwa hnglrdlava vepvvfsrme tklitwgadt aacgdiingl pvsarrgqei llgpadgmvs kgwrllapit ayaqqtrgll gciitsltgr dknqvegevq ivstatqtfl atcingvcwt vyhgagTRTI ASPKGPviqt ytnvdqdlvg wpapqgsrsl tpctcgssdl ylvTRHADVI PVRRRGDSRG SLLSPRpisy lkgssggpll cptghavglf raavctrgva kavdfipven lettmrspvf tdnssppavp qsfqvahlha ptgsgkstkv paayaakgyk vlvlnpsvaa tlgfgaymsK AHGVDPNIRT GVrtittgsp itystygkfl adagcsggay diiicdechs tdatsisgig tvldqaetag arlvvlataT PPGSVTVSHP nieevalstt geipfygkai plevikggrh lifchskkkc delaaklval ginavayyrg ldvsviptsg dvvvvstdal mtgftgdfds vidcntcvtq tvdfsldptf TIETTTLPQD AVSRTQRRGR TGRGKPGIYR FVAPGERPSg mfdssvlcec ydagcawyel tpaettvrlr aymntpglpv cqdhlgfweg vftglthida hflsqtkqsg enfpylvayq atvcaraqap ppswdqmrkc lirlkptlhg ptpllyrlga vqnevtlthp itkyimtcms adlevvtstw vlvggvlaal aayclstgcv vivgriVLSG KPAIIpdrev lyqefdemee csqhlpyieq gmmlaeqfkq kalgllqtas rhaevitpav qtnwqklevf wakhmwnfis giqylaglst lpgnpaiasl maftaavtsp lttgqtllfn ilggwvaaql aapgaatafv gaglagaald svglgkvlvd ilagygagva galvafkims gevpstedlv nllpailspg alavgvvfas ilrrrvgpge gavqwmnrli afasrgnhvs pthyvpesda aarvtailss ltvtqllrrl hqwissectt pcsgswlrdi wdwicevlsd fktwlkaklm PQLPGIPFVS cqrgyrgvwr gdgimhtrch cgaEITGHVK NGTmrivgpr tcknmwsgtf finayttgpc tplpapnykf alwrvsaeey veirrvgdfh yvsgmttdnl kcpcqipspe ffteldgvrl hrfappckpl lreevsfrvg lheYPVGSQL PCEpepdvav ltsmltdpsh itaeaagrrl argsppsmas ssasqlsaps lkatctanhd spdaeliean llwrqemggn ITRVESENKv vildsFDPLV AEEDEREVSV PAEILRKSRR FAPALPVWAR PDYnpllvet wkkpdyeppv vhgcpLPPPR SPPVPPPRkk rtvvltestl ptalaELATK SFGSSSTSGI TGDNTTTSSE PAPSGcppds dvesyssmpp legepgdpdl sdgswstvss gadtedvvcc smsyswtgal vtpcaaeeqk lpinalsnsl lrhhnlvYST TSRSACQRKK kvtfdrlqvl dshyqdvlke vkaaaskvka nllsveeacs lapphsaksk fgygakdvrc harkavahin svwkdlleds vtpidttima knevfCVQPE KGGRKPARLI VFPdlgvrvc ekmalydvvs klplavmgss ygfqyspgqr veflvqawks kKTPMGLSYD TRCFdstvte sdirteeaiy qccdldpqar vaiksltERL YVGGPLTNSR GENCGYRRCR ASRVLTTSCG Ntltryikar aacraaglqd ctmlvcgddl vvicesagvq edaaslraft eamtrysapp gdppqpeydl elitscssnv svahdgagkr vyyltrdptt plaraawetA RHTPVNSWLG Niimfaptlw armilmthff svliardqle qalnceiyga cysiepldlp piiqrlhgls afslhsyspg einrvaaclr klgVPPLRAW Rhrawsvrar llarggkaai cgkylfnwav rtklkltpit aagrldlsgw ftagysggdi yhsvsharpr wfwfclllla agvgiyllpn r
>P27958_REM465
1-17, 47-74, 103-113, 2188-2214, 2320-2333, 2351-2413
MSTNPKPQRK TKRNTNRrpq dvkfpgggqi vggvyllprr gprlgvRATR KTSERSQPRG RRQPIPKARR PEGRtwaqpg ypwplygneg cgwagwllsp rgSRPSWGPT DPRrrsrnlg kvidtltcgf adlmgyiplv gaplggaara lahgvrvled gvnyatgnlp gcsfsiflla llscltvpas ayqvrnssgl yhvtndcpns svvyeaadai lhtpgcvpcv regnasrcwv avtptvatrd gklpttqlrr hidllvgsat lcsalyvgdl cgsvflvgql ftfsprhhwt tqdcncsiyp ghitghrmaw nmmmnwspta alvvaqllri pqaimdmiag ahwgvlagik yfsmvgnwak vlvvlllfag vdaethvtgg nagrttaglv glltpgakqn iqlintngsw hinstalncn eslntgwlag lfyqhkfnss gcperlascr rltdfaqgwg pisyangsgl derpycwhyp prpcgivpak svcgpvycft pspvvvgttd rsgaptyswg andtdvfvln ntrpplgnwf gctwmnstgf tkvcgappcv iggvgnntll cptdcfrkyp eatysrcgsg pritprcmvd ypyrlwhypc tinytifkvr myvggvehrl eaacnwtrge rcdledrdrs elsplllstt qwqvlpcsft tlpalstgli hlhqnivdvq ylygvgssia swaikweyvv llfllladar vcsclwmmll isqaeaalen lvilnaasla gthglvsflv ffcfawylkg rwvpgavyal ygmwplllll lalpqrayal dtevaascgg vvlvglmalt lspyykryis wcmwwlqyfl trveaqlhvw vpplnvrggr davilltcvv hpalvfditk lllaifgplw ilqasllkvp yfvrvqgllr icalarkiag ghyvqmaiik lgaltgtcvy nhlaplrdwa hnglrdlava vepvvfsrme tklitwgadt aacgdiingl pvsarrgqei llgpadgmvs kgwrllapit ayaqqtrgll gciitsltgr dknqvegevq ivstatqtfl atcingvcwt vyhgagtrti aspkgpviqt ytnvdqdlvg wpapqgsrsl tpctcgssdl ylvtrhadvi pvrrrgdsrg sllsprpisy lkgssggpll cptghavglf raavctrgva kavdfipven lettmrspvf tdnssppavp qsfqvahlha ptgsgkstkv paayaakgyk vlvlnpsvaa tlgfgaymsk ahgvdpnirt gvrtittgsp itystygkfl adagcsggay diiicdechs tdatsisgig tvldqaetag arlvvlatat ppgsvtvshp nieevalstt geipfygkai plevikggrh lifchskkkc delaaklval ginavayyrg ldvsviptsg dvvvvstdal mtgftgdfds vidcntcvtq tvdfsldptf tietttlpqd avsrtqrrgr tgrgkpgiyr fvapgerpsg mfdssvlcec ydagcawyel tpaettvrlr aymntpglpv cqdhlgfweg vftglthida hflsqtkqsg enfpylvayq atvcaraqap ppswdqmrkc lirlkptlhg ptpllyrlga vqnevtlthp itkyimtcms adlevvtstw vlvggvlaal aayclstgcv vivgrivlsg kpaiipdrev lyqefdemee csqhlpyieq gmmlaeqfkq kalgllqtas rhaevitpav qtnwqklevf wakhmwnfis giqylaglst lpgnpaiasl maftaavtsp lttgqtllfn ilggwvaaql aapgaatafv gaglagaald svglgkvlvd ilagygagva galvafkims gevpstedlv nllpailspg alavgvvfas ilrrrvgpge gavqwmnrli afasrgnhvs pthyvpesda aarvtailss ltvtqllrrl hqwissectt pcsgswlrdi wdwicevlsd fktwlkaklm pqlpgipfvs cqrgyrgvwr gdgimhtrch cgaeitghvk ngtmrivgpr tcknmwsgtf finayttgpc tplpapnykf alwrvsaeey veirrvgdfh yvsgmttdnl kcpcqipspe ffteldgvrl hrfappckpl lreevsfrvg lheypvgsql pcepepdvav ltsmltdpsh itaeaagRRL ARGSPPSMAS SSASQLSAPS LKATctanhd spdaeliean llwrqemggn itrvesenkv vildsfdplv aeederevsv paeilrksrr fapalpvwar pdynpllvet wkkpdyeppv vhgcplpppR SPPVPPPRKK RTVvltestl ptalaelatk SFGSSSTSGI TGDNTTTSSE PAPSGCPPDS DVESYSSMPP LEGEPGDPDL SDGSWSTVSS GADtedvvcc smsyswtgal vtpcaaeeqk lpinalsnsl lrhhnlvyst tsrsacqrkk kvtfdrlqvl dshyqdvlke vkaaaskvka nllsveeacs lapphsaksk fgygakdvrc harkavahin svwkdlleds vtpidttima knevfcvqpe kggrkparli vfpdlgvrvc ekmalydvvs klplavmgss ygfqyspgqr veflvqawks kktpmglsyd trcfdstvte sdirteeaiy qccdldpqar vaikslterl yvggpltnsr gencgyrrcr asrvlttscg ntltryikar aacraaglqd ctmlvcgddl vvicesagvq edaaslraft eamtrysapp gdppqpeydl elitscssnv svahdgagkr vyyltrdptt plaraaweta rhtpvnswlg niimfaptlw armilmthff svliardqle qalnceiyga cysiepldlp piiqrlhgls afslhsyspg einrvaaclr klgvpplraw rhrawsvrar llarggkaai cgkylfnwav rtklkltpit aagrldlsgw ftagysggdi yhsvsharpr wfwfclllla agvgiyllpn r
| JOB-ID | P27958_135054ZiElPn8AAQEAAHI6V8IAAAAX |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | P27958 |
| Description | sp|P27958|POLG_HCV77 Genome polyprotein OS=Hepatitis C virus genotype 1a (isolate H77) OX=63746 PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 3011 |
| Download predictions | smoothed scores raw scores |