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>Q03463_LOOPS
1-122, 132-146, 161-173, 185-213, 219-258, 279-315, 400-409, 416-434, 445-624, 644-688, 777-788, 858-870, 945-962, 987-1021, 1045-1056, 1078-1176, 1187-1245, 1267-1328, 1348-1360, 1368-1396, 1420-1430, 1440-1532, 1542-1554, 1569-1583, 1595-1605, 1613-1639, 1687-1699, 1709-1719, 1776-1785, 1796-1804, 1869-1879, 1884-1891, 1903-1911, 1924-1939, 1964-1976, 1997-2079, 2098-2168, 2174-2181, 2188-2224, 2238-2247, 2252-2270, 2283-2334, 2350-2416, 2421-2444, 2454-2476, 2507-2529, 2549-2588, 2599-2619, 2630-2656, 2681-2711, 2725-2735, 2763-2812, 2820-2832, 2865-2901, 2911-2919, 2954-2989, 3004-3011
MSTIPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKVRR PEGRTWAQPG YPWPLYGNEG CGWAGWLLSP RGSRPSWGPT DPRRRSRNLG KVidtltcgf aDLMGYIPLV GAPLGGaara lahgvrvled GVNYATGNLP GCSfsiflla llscLTVPAS AYQVRNSTGL YHVTNDCPNS SIVyeahdAI LHTPGCVPCV REGNVSRCWV AMTPTVATRD GKLPATQLrr hidllvgsat lcsalyvgDL CGSVFLIGQL FTFSPRRHWT TQGCNCSIYP GHITGhrmaw dmmmnwspta alvmaqllri pqaildmiag ahwgvlagia yfsmvgnwak vlvvlllfag vdaetivsgg qaaramsglV SLFTPGAKQn iqlinTNGSW HINSTALNCN ESLNtgwlag liyqHKFNSS GCPERLASCR RLTDFDQGWG PISHANGSGP DQRPYCWHYP PKPCGIVPAK SVCGPVYCFT PSPVVVGTTD RSGAPTYNWG ANDTDVFVLN NTRPPLGNWF GCTWMNSTGF TKVCGAPPCV IGGGGNNTLH CPTDCFRKHP EATYSRCGSG PWITPRCLVD YPYRLWHYPC TINYtifkvr myvggvehrl daaCNWTRGE RCDLEDRDRS ELSPLLLSTT QWQVLPCSFT TLPALSTGli hlhqnivdvq ylygvgssia swaikweyvv llfllladar vcsclwmmll isqaeaalen lvilnaasla gtrglvsflv ffcfawYLKG RWVPGAAYal ygmwplllll lalpqrayal dtevaascgg vvlvglmalt lspyykrcis wclwwlqyfl trveaqlHVW VPPLNVRGGR davillmcvv hptlvfditk lllavlgplw ilqasllkvp yfvrvqgllr icalarkmvg ghyvqmaiik lgalTGTYVY NHLTPLRDWA HNglrdlava vepvvfsqme tklitwGADT AACGDIINGL PVSARKGREI LLGPADGMVS Kgwrllapit ayaqqtrgll gciiTSLTGR DKNQVEgevq ivstaaqtfl atcingvCWT VYHGAGTRTI ASPKGPVIQM YTNVDQDLVG WPAPQGARSL TPCTCGSSDL YLVTRHADVI PVRRRGDSRG SLLSPRPISY LKGSSGGPLL CPAGHVvgif raavctRGVA KAVDFIPVES LETTMRSPVF TDNSSPPAVP QSFQVAHLHA PTGSGKSTKV PAAYAaqgyk vlvlnpsvaa tlgfgaYMSK AHGIDPNIRT GVRTITTGSP ITYSTYGKFL ADGGCSGGAY DIIICDECHS TDATSVLGig tvldqaetag arlvvlaTAT PPGSITVPHA nieevalSTT GEIPFYGKAI PLEAIKGGRH LIFCHSkkkc delaaklval gvnavayyrG LDVSVIPTSG dvvvvatdaL MTGYTGDFDS VIDCNTCVTQ TVDFSLDPTF TIETTTLPQD AVSRTQRRGR TGRGKPGIYR FVAPGERPSG MFDSSILCEC YDTGCAWYEL TPaettvrlr aYMNTPGLPV CQDHlefweg vftglthiDA HFLSQTKQGG ENFpylvayq atvcARAQAP PPSWDqmwkc liRLKPTLHG PTPLLYRLGA VQGEVTLTHp vtkyimtcms adlevvtstw vlvggvlaal aayclstgcv vivgriVLSG RPAIIPDREv lyrefdemEE CSQHLPYIEq gmmlaeqfkq kalgllqtas rqaeviaptv qtnwqkleaf wakhmwnfis giqylAGLST LPGNPaiasl maftaAVTSP LTTSqtllfn ilggwvaaql aapgaatafv gsglagaavg svglgrvlvd ilagygagva galvafkiMS GELPSTEDLv nllPAILSPG Alvvgvvcaa ilRRHVGPGE Gavqwmnrli afaSRGNHVS PTHYVPESDa aarvtailss ltvtqllrrl hqwLSSESTT PCSGSWlrdi wdwicevlsd fktwlkTKLM PHLPGIPFVS CQHGYKGVWR GDGIMHTRCH CGAEITGHVK NGTMRIVGPK TCRNMWSGTF PINAYTTGPC TPLPAPNYTf alwrvsaeey veirrvgDFH YVTGMTTDNL KCPCQVPSPE FFTELDGVRL HRFAPPCKPL LREEVSFRVG LHDYPVGSQL PCEPEPDVav ltsMLTDPSH ItaaaagRRL ARGSPPSEAS SSASQLSAPS LKATCTINHD SPDAeliean llwrqemGGN ITRVESEnkv vILDSFDPLV AEEDEREISV paeilrksrr ftQALPIWAR PDYNPPLIET WKKPNYEPPV VHGCPLPPPQ SPPVPPPRKK RTVVltestl stalaelaaK SFGSSSTSGI TGDNTTTSSE PAPSGCSPDS DAESYSSMPP LEGEPGDPDL SDGSWSTVSS EAGTEDvvcc SMSYTWTGAL ITPCAAEEQK LPINalsnsl lrhHNLVYST TSRSACQRQK KVTFDRlqvl dshyqdvlke vkaaaskvka nllsveEACS LTPPHSAKSK FGYGAKDVRc harkavnhin svwkdlleDS VTPIQTTIMA KNEVFCVQPE KGGRKPARLI VFPDLGVRvc ekmalydvVS KLPPAVMGSS YGFQYSPGQr veflvqawkS KRTPMGFSYD TRCFDSTVTE SDIRTEeaiy qccdldpqar vairslterl YVGGPLTNSR GENCGYRRCR ASGVLTTSCG Ntltcyikar aacrAAGLQD CTMLVcgddl vvicesagvq edaaslraft eaMTRYSAPP GDPPQPEYDL ELITSCSSNV SVAHDGTGKR VYYLTRDPTT PLaraawetA RHTPVNSWLG NIimfaptlw armilmthff svliardqle qaldCEIYGA CYSIEPLDLP PIIQRLHGLS AFSLHSYSPG Einrvaaclr KLGVPPLRAw rhrarsvrar llsrggraai cgkylfnwav rtkLKLTPIA AAGRLDLSGW FTAGYSGGDI YHSVSHARPr wfwfclllla agvGIYLLPN R
>Q03463_HOTLOOPS
1-78, 103-120, 245-255, 294-305, 593-604, 1135-1155, 1270-1282, 1350-1359, 1422-1430, 1471-1509, 1686-1696, 1964-1975, 2034-2043, 2241-2250, 2256-2294, 2349-2375, 2459-2469, 2507-2521, 2566-2584, 2633-2644, 2678-2697, 2789-2801, 2820-2831, 2914-2923, 2930-2939
MSTIPKPQRK TKRNTNRRPQ DVKFPGGGQI VGGVYLLPRR GPRLGVRATR KTSERSQPRG RRQPIPKVRR PEGRTWAQpg ypwplygneg cgwagwllsp rgSRPSWGPT DPRRRSRNLG kvidtltcgf adlmgyiplv gaplggaara lahgvrvled gvnyatgnlp gcsfsiflla llscltvpas ayqvrnstgl yhvtndcpns sivyeahdai lhtpgcvpcv regnvsrcwv amtpTVATRD GKLPAtqlrr hidllvgsat lcsalyvgdl cgsvfligql ftfSPRRHWT TQGCNcsiyp ghitghrmaw dmmmnwspta alvmaqllri pqaildmiag ahwgvlagia yfsmvgnwak vlvvlllfag vdaetivsgg qaaramsglv slftpgakqn iqlintngsw hinstalncn eslntgwlag liyqhkfnss gcperlascr rltdfdqgwg pishangsgp dqrpycwhyp pkpcgivpak svcgpvycft pspvvvgttd rsgaptynwg andtdvfvln ntrpplgnwf gctwmnstgf tkvcgappcv iggggnntlh cptdcfrkhp eaTYSRCGSG PWITprclvd ypyrlwhypc tinytifkvr myvggvehrl daacnwtrge rcdledrdrs elsplllstt qwqvlpcsft tlpalstgli hlhqnivdvq ylygvgssia swaikweyvv llfllladar vcsclwmmll isqaeaalen lvilnaasla gtrglvsflv ffcfawylkg rwvpgaayal ygmwplllll lalpqrayal dtevaascgg vvlvglmalt lspyykrcis wclwwlqyfl trveaqlhvw vpplnvrggr davillmcvv hptlvfditk lllavlgplw ilqasllkvp yfvrvqgllr icalarkmvg ghyvqmaiik lgaltgtyvy nhltplrdwa hnglrdlava vepvvfsqme tklitwgadt aacgdiingl pvsarkgrei llgpadgmvs kgwrllapit ayaqqtrgll gciitsltgr dknqvegevq ivstaaqtfl atcingvcwt vyhgagtrti aspkgpviqm ytnvdqdlvg wpapqgarsl tpctcgssdl ylvtRHADVI PVRRRGDSRG SLLSPrpisy lkgssggpll cpaghvvgif raavctrgva kavdfipves lettmrspvf tdnssppavp qsfqvahlha ptgsgkstkv paayaaqgyk vlvlnpsvaa tlgfgaymsK AHGIDPNIRT GVrtittgsp itystygkfl adggcsggay diiicdechs tdatsvlgig tvldqaetag arlvvlataT PPGSITVPHa nieevalstt geipfygkai pleaikggrh lifchskkkc delaaklval gvnavayyrg lDVSVIPTSG dvvvvatdal mtgytgdfds vidcntcvtq tvdfsldptf TIETTTLPQD AVSRTQRRGR TGRGKPGIYR FVAPGERPSg mfdssilcec ydtgcawyel tpaettvrlr aymntpglpv cqdhlefweg vftglthida hflsqtkqgg enfpylvayq atvcaraqap ppswdqmwkc lirlkptlhg ptpllyrlga vqgevtlthp vtkyimtcms adlevvtstw vlvggvlaal aayclstgcv vivgrIVLSG RPAIIPdrev lyrefdemee csqhlpyieq gmmlaeqfkq kalgllqtas rqaeviaptv qtnwqkleaf wakhmwnfis giqylaglst lpgnpaiasl maftaavtsp lttsqtllfn ilggwvaaql aapgaatafv gsglagaavg svglgrvlvd ilagygagva galvafkims gelpstedlv nllpailspg alvvgvvcaa ilrrhvgpge gavqwmnrli afasrgnhvs pthyvpesda aarvtailss ltvtqllrrl hqwLSSESTT PCSGSwlrdi wdwicevlsd fktwlktklm phlpgipfvs cqhgykgvwr gdgimhtrch cgaEITGHVK NGTmrivgpk tcrnmwsgtf pinayttgpc tplpapnytf alwrvsaeey veirrvgdfh yvtgmttdnl kcpcqvpspe ffteldgvrl hrfappckpl lreevsfrvg lhdypvgsql pcepepdvav ltsmltdpsh itaaaagrrl argsppseas ssasqlsaps lkatctinhd spdaeliean llwrqemggn ITRVESENKV vildsFDPLV AEEDEREISV PAEILRKSRR FTQALPIWAR PDYNppliet wkkpnyeppv vhgcplpppq sppvppprkk rtvvltestl stalaelaAK SFGSSSTSGI TGDNTTTSSE PAPSGcspds daesyssmpp legepgdpdl sdgswstvss eagtedvvcc smsytwtgal itpcaaeeqk lpinalsnsl lrhhnlvyST TSRSACQRQk kvtfdrlqvl dshyqdvlke vkaaaskvka nllsveEACS LTPPHSAKSK Fgygakdvrc harkavnhin svwkdlleds vtpiqttima knevfCVQPE KGGRKPARLI VFPDlgvrvc ekmalydvvs klppavmgss ygfqyspgqr veflvqawks krTPMGFSYD TRCFdstvte sdirteeaiy qccdldpqar vairsltERL YVGGPLTNSR GENCGYRrcr asgvlttscg ntltcyikar aacraaglqd ctmlvcgddl vvicesagvq edaaslraft eamtrysapp gdppqpeydl elitscssNV SVAHDGTGKR Vyyltrdptt plaraawetA RHTPVNSWLG Niimfaptlw armilmthff svliardqle qaldceiyga cysiepldlp piiqrlhgls afslhsyspg einrvaaclr klgVPPLRAW RHRarsvraR LLSRGGRAAi cgkylfnwav rtklkltpia aagrldlsgw ftagysggdi yhsvsharpr wfwfclllla agvgiyllpn r
>Q03463_REM465
1-16, 47-65, 103-113, 2187-2210, 2320-2334, 2351-2414
MSTIPKPQRK TKRNTNrrpq dvkfpgggqi vggvyllprr gprlgvRATR KTSERSQPRG RRQPIpkvrr pegrtwaqpg ypwplygneg cgwagwllsp rgSRPSWGPT DPRrrsrnlg kvidtltcgf adlmgyiplv gaplggaara lahgvrvled gvnyatgnlp gcsfsiflla llscltvpas ayqvrnstgl yhvtndcpns sivyeahdai lhtpgcvpcv regnvsrcwv amtptvatrd gklpatqlrr hidllvgsat lcsalyvgdl cgsvfligql ftfsprrhwt tqgcncsiyp ghitghrmaw dmmmnwspta alvmaqllri pqaildmiag ahwgvlagia yfsmvgnwak vlvvlllfag vdaetivsgg qaaramsglv slftpgakqn iqlintngsw hinstalncn eslntgwlag liyqhkfnss gcperlascr rltdfdqgwg pishangsgp dqrpycwhyp pkpcgivpak svcgpvycft pspvvvgttd rsgaptynwg andtdvfvln ntrpplgnwf gctwmnstgf tkvcgappcv iggggnntlh cptdcfrkhp eatysrcgsg pwitprclvd ypyrlwhypc tinytifkvr myvggvehrl daacnwtrge rcdledrdrs elsplllstt qwqvlpcsft tlpalstgli hlhqnivdvq ylygvgssia swaikweyvv llfllladar vcsclwmmll isqaeaalen lvilnaasla gtrglvsflv ffcfawylkg rwvpgaayal ygmwplllll lalpqrayal dtevaascgg vvlvglmalt lspyykrcis wclwwlqyfl trveaqlhvw vpplnvrggr davillmcvv hptlvfditk lllavlgplw ilqasllkvp yfvrvqgllr icalarkmvg ghyvqmaiik lgaltgtyvy nhltplrdwa hnglrdlava vepvvfsqme tklitwgadt aacgdiingl pvsarkgrei llgpadgmvs kgwrllapit ayaqqtrgll gciitsltgr dknqvegevq ivstaaqtfl atcingvcwt vyhgagtrti aspkgpviqm ytnvdqdlvg wpapqgarsl tpctcgssdl ylvtrhadvi pvrrrgdsrg sllsprpisy lkgssggpll cpaghvvgif raavctrgva kavdfipves lettmrspvf tdnssppavp qsfqvahlha ptgsgkstkv paayaaqgyk vlvlnpsvaa tlgfgaymsk ahgidpnirt gvrtittgsp itystygkfl adggcsggay diiicdechs tdatsvlgig tvldqaetag arlvvlatat ppgsitvpha nieevalstt geipfygkai pleaikggrh lifchskkkc delaaklval gvnavayyrg ldvsviptsg dvvvvatdal mtgytgdfds vidcntcvtq tvdfsldptf tietttlpqd avsrtqrrgr tgrgkpgiyr fvapgerpsg mfdssilcec ydtgcawyel tpaettvrlr aymntpglpv cqdhlefweg vftglthida hflsqtkqgg enfpylvayq atvcaraqap ppswdqmwkc lirlkptlhg ptpllyrlga vqgevtlthp vtkyimtcms adlevvtstw vlvggvlaal aayclstgcv vivgrivlsg rpaiipdrev lyrefdemee csqhlpyieq gmmlaeqfkq kalgllqtas rqaeviaptv qtnwqkleaf wakhmwnfis giqylaglst lpgnpaiasl maftaavtsp lttsqtllfn ilggwvaaql aapgaatafv gsglagaavg svglgrvlvd ilagygagva galvafkims gelpstedlv nllpailspg alvvgvvcaa ilrrhvgpge gavqwmnrli afasrgnhvs pthyvpesda aarvtailss ltvtqllrrl hqwlssestt pcsgswlrdi wdwicevlsd fktwlktklm phlpgipfvs cqhgykgvwr gdgimhtrch cgaeitghvk ngtmrivgpk tcrnmwsgtf pinayttgpc tplpapnytf alwrvsaeey veirrvgdfh yvtgmttdnl kcpcqvpspe ffteldgvrl hrfappckpl lreevsfrvg lhdypvgsql pcepepdvav ltsmltdpsh itaaaaGRRL ARGSPPSEAS SSASQLSAPS lkatctinhd spdaeliean llwrqemggn itrvesenkv vildsfdplv aeedereisv paeilrksrr ftqalpiwar pdynppliet wkkpnyeppv vhgcplpppQ SPPVPPPRKK RTVVltestl stalaelaak SFGSSSTSGI TGDNTTTSSE PAPSGCSPDS DAESYSSMPP LEGEPGDPDL SDGSWSTVSS EAGTedvvcc smsytwtgal itpcaaeeqk lpinalsnsl lrhhnlvyst tsrsacqrqk kvtfdrlqvl dshyqdvlke vkaaaskvka nllsveeacs ltpphsaksk fgygakdvrc harkavnhin svwkdlleds vtpiqttima knevfcvqpe kggrkparli vfpdlgvrvc ekmalydvvs klppavmgss ygfqyspgqr veflvqawks krtpmgfsyd trcfdstvte sdirteeaiy qccdldpqar vairslterl yvggpltnsr gencgyrrcr asgvlttscg ntltcyikar aacraaglqd ctmlvcgddl vvicesagvq edaaslraft eamtrysapp gdppqpeydl elitscssnv svahdgtgkr vyyltrdptt plaraaweta rhtpvnswlg niimfaptlw armilmthff svliardqle qaldceiyga cysiepldlp piiqrlhgls afslhsyspg einrvaaclr klgvpplraw rhrarsvrar llsrggraai cgkylfnwav rtklkltpia aagrldlsgw ftagysggdi yhsvsharpr wfwfclllla agvgiyllpn r
| JOB-ID | Q03463_192612Ziv-1H8AAQEAAHG535oAAAAL |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | Q03463 |
| Description | sp|Q03463|POLG_HCVJ1 Genome polyprotein OS=Hepatitis C virus genotype 1b (isolate HC-J1) OX=421877 PE=1 SV=1 |
| Title/ID | none |
| Sequence length | 3011 |
| Download predictions | smoothed scores raw scores |