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>Q45340_LOOPS
1-16, 37-99, 106-119, 126-191, 211-268, 278-345, 371-382, 389-426, 445-456, 467-515, 526-547, 566-576, 584-618, 623-641, 649-657, 663-671, 679-697, 742-753, 777-832, 838-885, 895-916, 929-1010
MYLDRFRQCP SSLQIPrsaw rlhalaaala lagmarLAPA AAQAPQPPVA GAPHAQDAGQ EGEFDHRDNT LIAVFDDGVG INLDDDPDEL GETAPPTLKd ihisvEHKNP MSKPAIGVRv sgagrALTLA GSTIDATEGG IPAVVRRGGT LELDGVTVAG GEGMEPMTVS DAGSRLSVRG GVLGGEAPGV Glvraaqggq asiidatlqs ILGPALIADG GSISVAGGSI DMDMGPGFPP PPPPLPGAPL AAHPPLDRVA AVHAGQDGkv tlrevalRAH GPQATGVYAY MPGSEITLQG GTVSVQGDDG AGVVAGAGLL DALPPGGTVR LDGTTVSTDG ANTDAvlvrg daaraevvnt vlrtakslaa GVSAQHGGRV TLrqtrieTA GAGAEGISVL GFEPQSGSGP ASVDMQGGSI TTTGNRaagi althgsarle gvavRAEGSG SSAAQLangt lvvsagSLAS AQSGAISVTD TPLKLMPGAL ASSTVSVRLT DGATAQGGNG VFLQQhstip vavalESGAL ARGDIVADGN KPLDAGIsls vasgaawhga tqvlqSATLG KGGTWVvnad srvQDMSMRG GRVEFQAPAP EASYKTLTLQ TLDGNGVFvl ntNVAAGQND QLRVTGRADG QhrvlvrnAG GEADSRGarl glVHTQGQGN AtfrlanvGK AVDLGTWRYS LAEDPKThvw slqragqals gaanaavnaa dlssialaes naldkrlgel rLRADAGGPW ARTfserqqi snrharaydq tvsgleIGLD RGWSASGGRW YAGGLLGYTY ADRTYPGDGG GKVKGLHVGG YAAYVGDGGY YLdtvlrLGR YDQQYNIAGT DGGRVTADYR TSGAAWSLEG GRRFELPNDW FAEPQaevml wrtsGKRYRA SNGLRVKVDA NTATLGrlgl rfgrrialAG GNIVQPYARL GWTQEFKSTG DVRTNGIGHA GAGRHGRVEL GAGVDAALGK GHNLYASYEY AAGDRINIPW SFHAGYRYSF
>Q45340_HOTLOOPS
1-16, 131-150, 368-382, 566-574, 624-642, 650-657, 744-772, 847-857, 897-919
MYLDRFRQCP SSLQIPrsaw rlhalaaala lagmarlapa aaqapqppva gaphaqdagq egefdhrdnt liavfddgvg inldddpdel getapptlkd ihisvehknp mskpaigvrv sgagraltla GSTIDATEGG IPAVVRRGGT leldgvtvag gegmepmtvs dagsrlsvrg gvlggeapgv glvraaqggq asiidatlqs ilgpaliadg gsisvaggsi dmdmgpgfpp pppplpgapl aahppldrva avhagqdgkv tlrevalrah gpqatgvyay mpgseitlqg gtvsvqgddg agvvagagll dalppggtvr ldgttvstdg antdavlvrg daaraevvnt vlrtaksLAA GVSAQHGGRV TLrqtrieta gagaegisvl gfepqsgsgp asvdmqggsi tttgnraagi althgsarle gvavraegsg ssaaqlangt lvvsagslas aqsgaisvtd tplklmpgal asstvsvrlt dgataqggng vflqqhstip vavalesgal argdivadgn kpldagisls vasgaawhga tqvlqSATLG KGGTwvvnad srvqdmsmrg grvefqapap easyktltlq tldgngvfvl ntnVAAGQND QLRVTGRADG QHrvlvrnaG GEADSRGarl glvhtqgqgn atfrlanvgk avdlgtwrys laedpkthvw slqragqals gaanaavnaa dlssialaes naldkrlgel rlrADAGGPW ARTFSERQQI SNRHARAYDQ TVsgleigld rgwsasggrw yaggllgyty adrtypgdgg gkvkglhvgg yaayvgdggy yldtvlrlgr ydqqynIAGT DGGRVTAdyr tsgaawsleg grrfelpndw faepqaevml wrtsgkRYRA SNGLRVKVDA NTATLGRLGl rfgrrialag gnivqpyarl gwtqefkstg dvrtngigha gagrhgrvel gagvdaalgk ghnlyasyey aagdrinipw sfhagyrysf
>Q45340_REM465
1-10, 37-61, 405-414, 705-715
MYLDRFRQCP sslqiprsaw rlhalaaala lagmarLAPA AAQAPQPPVA GAPHAQDAGQ Egefdhrdnt liavfddgvg inldddpdel getapptlkd ihisvehknp mskpaigvrv sgagraltla gstidategg ipavvrrggt leldgvtvag gegmepmtvs dagsrlsvrg gvlggeapgv glvraaqggq asiidatlqs ilgpaliadg gsisvaggsi dmdmgpgfpp pppplpgapl aahppldrva avhagqdgkv tlrevalrah gpqatgvyay mpgseitlqg gtvsvqgddg agvvagagll dalppggtvr ldgttvstdg antdavlvrg daaraevvnt vlrtakslaa gvsaqhggrv tlrqtrieta gagaegisvl gfepQSGSGP ASVDmqggsi tttgnraagi althgsarle gvavraegsg ssaaqlangt lvvsagslas aqsgaisvtd tplklmpgal asstvsvrlt dgataqggng vflqqhstip vavalesgal argdivadgn kpldagisls vasgaawhga tqvlqsatlg kggtwvvnad srvqdmsmrg grvefqapap easyktltlq tldgngvfvl ntnvaagqnd qlrvtgradg qhrvlvrnag geadsrgarl glvhtqgqgn atfrlanvgk avdlgtwrys laedpkthvw slqrAGQALS GAANAavnaa dlssialaes naldkrlgel rlradaggpw artfserqqi snrharaydq tvsgleigld rgwsasggrw yaggllgyty adrtypgdgg gkvkglhvgg yaayvgdggy yldtvlrlgr ydqqyniagt dggrvtadyr tsgaawsleg grrfelpndw faepqaevml wrtsgkryra snglrvkvda ntatlgrlgl rfgrrialag gnivqpyarl gwtqefkstg dvrtngigha gagrhgrvel gagvdaalgk ghnlyasyey aagdrinipw sfhagyrysf
| JOB-ID | Q45340_180129Zko@eH8AAQEAAEMvebUAAAAR |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | Q45340 |
| Description | sp|Q45340|BRKA_BORPE BrkA autotransporter OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=brkA PE=1 SV=1 |
| Title/ID | none |
| Sequence length | 1010 |
| Download predictions | smoothed scores raw scores |