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>Q99IB8_LOOPS
1-123, 130-145, 160-172, 187-210, 222-257, 294-315, 380-392, 400-434, 445-458, 470-628, 648-691, 781-799, 806-822, 835-842, 861-877, 948-966, 974-984, 995-1028, 1052-1062, 1088-1133, 1140-1181, 1191-1246, 1272-1292, 1300-1331, 1351-1399, 1424-1434, 1444-1457, 1465-1518, 1526-1538, 1546-1556, 1599-1608, 1618-1646, 1687-1702, 1750-1759, 1780-1790, 1800-1808, 1818-1831, 1873-1895, 1907-1915, 1928-1944, 1966-1983, 1997-2083, 2097-2172, 2177-2186, 2194-2337, 2350-2489, 2530-2548, 2568-2610, 2624-2639, 2653-2674, 2702-2731, 2748-2756, 2766-2774, 2786-2803, 2809-2834, 2842-2857, 2884-2901, 2910-2920, 2933-2940, 2975-3012, 3026-3033
MSTNPKPQRK TKRNTNRRPE DVKFPGGGQI VGGVYLLPRR GPRLGVRTTR KTSERSQPRG RRQPIPKDRR STGKAWGKPG RPWPLYGNEG LGWAGWLLSP RGSRPSWGPT DPRHRSRNVG KVIdtltcgF ADLMGYIPVV GAPLSgaara vahgvrvleD GVNYATGNLP GFpfsiflla llscitVPVS AAQVKNTSSS YMVTNDCSND sitwqleaav lHVPGCVPCE RVGNTSRCWV PVSPNMAVRQ PGALTQGlrt hidmvvmsat fcsalyvgdl cggvmlaaqv fivSPQYHWF VQECNCSIYP GTITGhrmaw dmmmnwspta tmilayvmrv peviidivsg ahwgvmfgla yfsmqgawak vivilllaaG VDAGTTTVGG AVarstnviA GVFSHGPQQN IQLINTNGSW HINRTALNCN DSLNtgflaa lfytNRFNSS GCPGRLSAcr nieafrigwG TLQYEDNVTN PEDMRPYCWH YPPKPCGVVP ARSVCGPVYC FTPSPVVVGT TDRRGVPTYT WGENETDVFL LNSTRPPQGS WFGCTWMNST GFTKTCGAPP CRTRADFNAS TDLLCPTDCF RKHPDATYIK CGSGPWLTPK CLVHYPYRLW HYPCTVNFti fkirmyvggv ehrltaaCNF TRGDRCDLED RDRSQLSPLL HSTTEWAILP CTYSDLPALS Tgllhlhqni vdvqymygls paitkyvvrw ewvvllflll adarvcaclw mlillgqaea aleklvvlha asaanchgll yfaiffvaaw HIRGRVVPLT TYCLTGLWPf clllmALPRQ AYAYDAPVHG QIgvgllili tlftLTPGYK TLlgqclwwl cylltlgeam IQEWVPPMQV RGGRDGIawa vtifcpgvvf ditkwllall gpayllraal thvpyfvrah alirvcalvk qlaggryvqv allalgrWTG TYIYDHLTPM SDWAASglrd lavAVEPIIF SPMEkkvivw gaetAACGDI LHGLPVSARL GQEILLGPAD GYTSKGWKll apitayaqqt rgllgaivvs mTGRDRTEQA GEvqilstvs qsflgttisg vlwtvyhGAG NKTLAGLRGP VTQMYSSAEG DLVGWPSPPG TKSLEPCKCG AVDlylvtrN ADVIPARRRG DKRGALLSPR PISTLKGSSG GPVLCPRGHV Vglfraavcs RGVAKSIDFI PVETLDVVTR SPTFSDNSTP PAVPQTYQVG YLHAPTGSGK STKVPVayaa qgykvlvlnp svaatlgfga yLSKAHGINP NIRTGVRTVM TGeaitystY GKFLADGGCA SGAYDIIICD ECHAVDATSI Lgigtvldqa etagvrltvl ATATPPGSVT TPHPDIEEVG LGREGEIPFY GRAIPLSCIK GGRHLIFCHs kkkcdelaaa lrgmglnava yyrGLDVSII PAQGdvvvva tdaLMTGYTG DFDSVIDcnv avtqAVDFSL DPTFTITTQT VPQDAVSRSQ RRGRTGRGRQ GTYRYVSTGE RASGMFDSvv lcecyDAGAA WYDLTPAEtt vrlraYFNTP GLPVCQdhle fweavftglt hidahflsqt kqagenfayl vayqatvcAR AKAPPPSWda mwkclarLKP TLAGPTPLLY RLGPITNEVT LTHPGTkyia tcmqadlevm tstwvlaggv laavaaycla tgcvsiIGRL HVNQRVVVAP DKevlyeafd emeecasraa lieegqriae mlkskiqgll qqaskqaqdI QPAMQASWPk veqfwarhmw nfisgiqylA GLSTLPGNPA vasmmafsaA LTSPLSTStt illnimgGWL ASQIAPPAGA Tgfvvsglvg aavgsiglgk vlvdilagyg agisgalvaf kiMSGEKPSM EDVINLLPGI LSPGAlvvgv icaailRRHV GPGEGavqwm nrliafaSRG NHVAPTHYVT ESDAsqrvtq llgsltitsl lrrlhNWITE DCPIPCSGSW LRDvwdwvct iltdfkNWLT SKLFPKLPGL PFISCQKGYK GVWAGTGIMT TRCPCGANIS GNVRLGSMRI TGPKTCMNTW QGTFPINCYT EGQCAPKPPT NYKtaiwrva aseyaeVTQH GSYSYVTGLT TDNLKIPCQL PSPEFFSWVD GVQIHRFAPT PKPFFRDEVS FCVGLNSYAV GSQLPCEPEP DAdvlrSMLT DPPHITaeta arrLARGSPP SEASSSVSQL SAPSLRATCT THSNTYDVDM VDANLLMEGG VAQTEPESRV PVLDFLEPMA EEESDLEPSI PSECMLPRSG FPRALPAWAR PDYNPPLVES WRRPDYQPPT VAGCALPPPK KAPTPPPRRR RTVGLSEsti sealqqlaiK TFGQPPSSGD AGSSTGAGAA ESGGPTSPGE PAPSETGSAS SMPPLEGEPG DPDLESDQVE LQPPPQGGGV APGSGSGSWS TCSEEDDTTV CCSMSYSWTG ALITPCSPEE EKLPINPLSN SLLRYHNKVY CTTSKSASQr akkvtfdrtq vldahydsvl kdiklaaskv sarlltleeA CQLTPPHSAR SKYGFGAKev rslsgravnh iksvwkdLLE DPQTPIPTTI MAKNEVFCVD PAKGGKKPAR LIVYPDLGVR vcekmalydi tqkLPQAVMG ASYGFQYSPa qrveyllkaw aeKKDPMGFS YDTRCFDSTV TERDirtees iyqacslpee artaihslte rLYVGGPMFN SKGQTCGYRR CRASGVLTTS Mgntitcyvk alaackaAGI VAPTMLvcgd dlvviSESQG TEEDernlra fteamTRYSA PPGDPPRPEY DLElitscSS NVSVALGPRG RRRYYLTRDP TTPLaraawe tVRHSPINSW LGNIIQYapt iwvrmvlmth ffsilmvqdt ldqNLNFEMY GSVYSVNPLD LpaiierlhG LDAFSMHTYS hheltrvasa lrKLGAPPLR vwksraravr aslisrggka avcgrylfnw avktKLKLTP LPEARLLDLS SWFTVGAGGG DIFHSVSRAR PRsllfglll lfvgvGLFLL PAR
>Q99IB8_HOTLOOPS
1-84, 106-120, 510-524, 598-607, 1139-1173, 1193-1205, 1211-1223, 1273-1287, 1352-1366, 1474-1515, 1939-1947, 2201-2215, 2239-2249, 2263-2274, 2309-2330, 2482-2501, 2529-2544, 2590-2606, 2653-2666, 2766-2776, 2786-2795, 2810-2834, 2843-2853, 2953-2963
MSTNPKPQRK TKRNTNRRPE DVKFPGGGQI VGGVYLLPRR GPRLGVRTTR KTSERSQPRG RRQPIPKDRR STGKAWGKPG RPWPlygneg lgwagwllsp rgsrpSWGPT DPRHRSRNVG kvidtltcgf adlmgyipvv gaplsgaara vahgvrvled gvnyatgnlp gfpfsiflla llscitvpvs aaqvkntsss ymvtndcsnd sitwqleaav lhvpgcvpce rvgntsrcwv pvspnmavrq pgaltqglrt hidmvvmsat fcsalyvgdl cggvmlaaqv fivspqyhwf vqecncsiyp gtitghrmaw dmmmnwspta tmilayvmrv peviidivsg ahwgvmfgla yfsmqgawak vivilllaag vdagtttvgg avarstnvia gvfshgpqqn iqlintngsw hinrtalncn dslntgflaa lfytnrfnss gcpgrlsacr nieafrigwg tlqyednvtn pedmrpycwh yppkpcgvvp arsvcgpvyC FTPSPVVVGT TDRRgvptyt wgenetdvfl lnstrppqgs wfgctwmnst gftktcgapp crtradfnas tdllcptdcf rkhpdatYIK CGSGPWLtpk clvhypyrlw hypctvnfti fkirmyvggv ehrltaacnf trgdrcdled rdrsqlspll hsttewailp ctysdlpals tgllhlhqni vdvqymygls paitkyvvrw ewvvllflll adarvcaclw mlillgqaea aleklvvlha asaanchgll yfaiffvaaw hirgrvvplt tycltglwpf clllmalprq ayaydapvhg qigvgllili tlftltpgyk tllgqclwwl cylltlgeam iqewvppmqv rggrdgiawa vtifcpgvvf ditkwllall gpayllraal thvpyfvrah alirvcalvk qlaggryvqv allalgrwtg tyiydhltpm sdwaasglrd lavavepiif spmekkvivw gaetaacgdi lhglpvsarl gqeillgpad gytskgwkll apitayaqqt rgllgaivvs mtgrdrteqa gevqilstvs qsflgttisg vlwtvyhgag nktlaglrgp vtqmyssaeg dlvgwpsppg tkslepckcg avdlylvtRN ADVIPARRRG DKRGALLSPR PISTLKGSSG GPVlcprghv vglfraavcs rgVAKSIDFI PVETLdvvtr SPTFSDNSTP PAVpqtyqvg ylhaptgsgk stkvpvayaa qgykvlvlnp svaatlgfga ylSKAHGINP NIRTGVRtvm tgeaitysty gkfladggca sgaydiiicd echavdatsi lgigtvldqa etagvrltvl aTATPPGSVT TPHPDIeevg lgregeipfy graiplscik ggrhlifchs kkkcdelaaa lrgmglnava yyrgldvsii paqgdvvvva tdalmtgytg dfdsvidcnv avtqavdfsl dptFTITTQT VPQDAVSRSQ RRGRTGRGRQ GTYRYVSTGE RASGMfdsvv lcecydagaa wydltpaett vrlrayfntp glpvcqdhle fweavftglt hidahflsqt kqagenfayl vayqatvcar akapppswda mwkclarlkp tlagptplly rlgpitnevt lthpgtkyia tcmqadlevm tstwvlaggv laavaaycla tgcvsiigrl hvnqrvvvap dkevlyeafd emeecasraa lieegqriae mlkskiqgll qqaskqaqdi qpamqaswpk veqfwarhmw nfisgiqyla glstlpgnpa vasmmafsaa ltsplststt illnimggwl asqiappaga tgfvvsglvg aavgsiglgk vlvdilagyg agisgalvaf kimsgekpsm edvinllpgi lspgalvvgv icaailrrhv gpgegavqwm nrliafasrg nhvapthyVT ESDASQRvtq llgsltitsl lrrlhnwite dcpipcsgsw lrdvwdwvct iltdfknwlt sklfpklpgl pfiscqkgyk gvwagtgimt trcpcganis gnvrlgsmri tgpktcmntw qgtfpincyt egqcapkppt nyktaiwrva aseyaevtqh gsysyvtglt tdnlkipcql pspeffswvd gvqihrfapt pkpffrdevs fcvglnsyav gsqlpcepep dadvlrsmlt dpphitaeta arrlargspp SEASSSVSQL SAPSLratct thsntydvdm vdanllmeGG VAQTEPESRv pvldflepma eeESDLEPSI PSECmlprsg fpralpawar pdynpplves wrrpdyqpPT VAGCALPPPK KAPTPPPRRR rtvglsesti sealqqlaik tfgqppssgd agsstgagaa esggptspge papsetgsas smpplegepg dpdlesdqve lqpppqgggv apgsgsgsws tcseeddttv ccsmsyswtg alitpcspee eklpinplsn sllryhnkvy cTTSKSASQR AKKVTFDRTQ Vldahydsvl kdiklaaskv sarlltleEA CQLTPPHSAR SKYGfgakev rslsgravnh iksvwkdlle dpqtpiptti maknevfcvD PAKGGKKPAR LIVYPDlgvr vcekmalydi tqklpqavmg asygfqyspa qrveyllkaw aeKKDPMGFS YDTRCFdstv terdirtees iyqacslpee artaihslte rlyvggpmfn skgqtcgyrr crasgvltts mgntitcyvk alaackaagi vaptmlvcgd dlvviSESQG TEEDERnlra fteamTRYSA PPGDPprpey dlelitscsS NVSVALGPRG RRRYYLTRDP TTPLaraawe tvRHSPINSW LGNiiqyapt iwvrmvlmth ffsilmvqdt ldqnlnfemy gsvysvnpld lpaiierlhg ldafsmhtys hheltrvasa lrklgapplr vwksraravr asLISRGGKA AVCgrylfnw avktklkltp lpearlldls swftvgaggg difhsvsrar prsllfglll lfvgvglfll par
>Q99IB8_REM465
1-17, 47-76, 1211-1221, 1481-1500, 1739-1757, 2191-2215, 2260-2269, 2320-2333, 2354-2397, 2409-2437, 2484-2493, 2768-2775
MSTNPKPQRK TKRNTNRrpe dvkfpgggqi vggvyllprr gprlgvRTTR KTSERSQPRG RRQPIPKDRR STGKAWgkpg rpwplygneg lgwagwllsp rgsrpswgpt dprhrsrnvg kvidtltcgf adlmgyipvv gaplsgaara vahgvrvled gvnyatgnlp gfpfsiflla llscitvpvs aaqvkntsss ymvtndcsnd sitwqleaav lhvpgcvpce rvgntsrcwv pvspnmavrq pgaltqglrt hidmvvmsat fcsalyvgdl cggvmlaaqv fivspqyhwf vqecncsiyp gtitghrmaw dmmmnwspta tmilayvmrv peviidivsg ahwgvmfgla yfsmqgawak vivilllaag vdagtttvgg avarstnvia gvfshgpqqn iqlintngsw hinrtalncn dslntgflaa lfytnrfnss gcpgrlsacr nieafrigwg tlqyednvtn pedmrpycwh yppkpcgvvp arsvcgpvyc ftpspvvvgt tdrrgvptyt wgenetdvfl lnstrppqgs wfgctwmnst gftktcgapp crtradfnas tdllcptdcf rkhpdatyik cgsgpwltpk clvhypyrlw hypctvnfti fkirmyvggv ehrltaacnf trgdrcdled rdrsqlspll hsttewailp ctysdlpals tgllhlhqni vdvqymygls paitkyvvrw ewvvllflll adarvcaclw mlillgqaea aleklvvlha asaanchgll yfaiffvaaw hirgrvvplt tycltglwpf clllmalprq ayaydapvhg qigvgllili tlftltpgyk tllgqclwwl cylltlgeam iqewvppmqv rggrdgiawa vtifcpgvvf ditkwllall gpayllraal thvpyfvrah alirvcalvk qlaggryvqv allalgrwtg tyiydhltpm sdwaasglrd lavavepiif spmekkvivw gaetaacgdi lhglpvsarl gqeillgpad gytskgwkll apitayaqqt rgllgaivvs mtgrdrteqa gevqilstvs qsflgttisg vlwtvyhgag nktlaglrgp vtqmyssaeg dlvgwpsppg tkslepckcg avdlylvtrn adviparrrg dkrgallspr pistlkgssg gpvlcprghv vglfraavcs rgvaksidfi pvetldvvtr SPTFSDNSTP Pavpqtyqvg ylhaptgsgk stkvpvayaa qgykvlvlnp svaatlgfga ylskahginp nirtgvrtvm tgeaitysty gkfladggca sgaydiiicd echavdatsi lgigtvldqa etagvrltvl atatppgsvt tphpdieevg lgregeipfy graiplscik ggrhlifchs kkkcdelaaa lrgmglnava yyrgldvsii paqgdvvvva tdalmtgytg dfdsvidcnv avtqavdfsl dptftittqt VPQDAVSRSQ RRGRTGRGRQ gtyryvstge rasgmfdsvv lcecydagaa wydltpaett vrlrayfntp glpvcqdhle fweavftglt hidahflsqt kqagenfayl vayqatvcar akapppswda mwkclarlkp tlagptplly rlgpitnevt lthpgtkyia tcmqadlevm tstwvlaggv laavaaycla tgcvsiigrl hvnqrvvvap dkevlyeafd emeecasraa lieegqriae mlkskiqgLL QQASKQAQDI QPAMQASwpk veqfwarhmw nfisgiqyla glstlpgnpa vasmmafsaa ltsplststt illnimggwl asqiappaga tgfvvsglvg aavgsiglgk vlvdilagyg agisgalvaf kimsgekpsm edvinllpgi lspgalvvgv icaailrrhv gpgegavqwm nrliafasrg nhvapthyvt esdasqrvtq llgsltitsl lrrlhnwite dcpipcsgsw lrdvwdwvct iltdfknwlt sklfpklpgl pfiscqkgyk gvwagtgimt trcpcganis gnvrlgsmri tgpktcmntw qgtfpincyt egqcapkppt nyktaiwrva aseyaevtqh gsysyvtglt tdnlkipcql pspeffswvd gvqihrfapt pkpffrdevs fcvglnsyav gsqlpcepep dadvlrsmlt dpphitaeta ARRLARGSPP SEASSSVSQL SAPSLratct thsntydvdm vdanllmegg vaqtepesrv pvldflepmA EEESDLEPSi psecmlprsg fpralpawar pdynpplves wrrpdyqppt vagcalpppK KAPTPPPRRR RTVglsesti sealqqlaik tfgQPPSSGD AGSSTGAGAA ESGGPTSPGE PAPSETGSAS SMPPLEGepg dpdlesdqVE LQPPPQGGGV APGSGSGSWS TCSEEDDttv ccsmsyswtg alitpcspee eklpinplsn sllryhnkvy cttSKSASQR AKKvtfdrtq vldahydsvl kdiklaaskv sarlltleea cqltpphsar skygfgakev rslsgravnh iksvwkdlle dpqtpiptti maknevfcvd pakggkkpar livypdlgvr vcekmalydi tqklpqavmg asygfqyspa qrveyllkaw aekkdpmgfs ydtrcfdstv terdirtees iyqacslpee artaihslte rlyvggpmfn skgqtcgyrr crasgvltts mgntitcyvk alaackaagi vaptmlvcgd dlvviseSQG TEEDErnlra fteamtrysa ppgdpprpey dlelitscss nvsvalgprg rrryyltrdp ttplaraawe tvrhspinsw lgniiqyapt iwvrmvlmth ffsilmvqdt ldqnlnfemy gsvysvnpld lpaiierlhg ldafsmhtys hheltrvasa lrklgapplr vwksraravr aslisrggka avcgrylfnw avktklkltp lpearlldls swftvgaggg difhsvsrar prsllfglll lfvgvglfll par
| JOB-ID | Q99IB8_013333Zi2nbX8AAQEAAFxqjUcAAAAF |
|---|---|
| Frames used | smooth=8 peak=8 join=4 |
| Thresholds used | coils=0.516 rem465=0.6 hot loops=0.1204 |
| Name | Q99IB8 |
| Description | sp|Q99IB8|POLG_HCVJF Genome polyprotein OS=Hepatitis C virus genotype 2a (isolate JFH-1) OX=356411 PE=1 SV=3 |
| Title/ID | none |
| Sequence length | 3033 |
| Download predictions | smoothed scores raw scores |